From ca5a10ecf4b494229c8cff0d4fbc80318a251ce8 Mon Sep 17 00:00:00 2001
From: stephanbreimann <stephanbreimann@gmail.com>
Date: Fri, 5 Apr 2024 19:51:14 +0200
Subject: [PATCH] Update requirements.txt

---
 docs/requirements_docs.txt |  9 ----
 pyproject.toml             | 89 +++++++++++++++++++++-----------------
 requirements.txt           |  1 +
 3 files changed, 51 insertions(+), 48 deletions(-)

diff --git a/docs/requirements_docs.txt b/docs/requirements_docs.txt
index 72cb7a43..c1c32098 100644
--- a/docs/requirements_docs.txt
+++ b/docs/requirements_docs.txt
@@ -6,25 +6,16 @@ ipython>=8.16.1
 hypothesis>=6.86.2
 pytest>=7.4.2
 
-nbconvert>=7.8.0
-nbformat>=5.9.2
-UpSetPlot>=0.8.0
-
 # Additional dependencies for developer version (pip install aaanalasis[dev])
 black==22.12.0
 docutils==0.18.0
-hypothesis>=6.86.2
 ipykernel==6.25.2
-nbconvert==7.8.0
 nbconvert>=7.8.0
-nbformat==5.9.2
 nbformat>=5.9.2
 nbsphinx==0.9.3
 numpydoc==1.5.0
 pandoc==2.3
 poetry==1.6.1
-pytest==7.4.2
-pytest>=7.4.2
 pytest-mpl==0.16.1
 sphinx==5.3.0       #,<7.0   # Newest version not campatible with myst_nb
 sphinx-autodoc-typehints==1.15.0
diff --git a/pyproject.toml b/pyproject.toml
index b8f97fcf..2b55e3ef 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -10,6 +10,7 @@ authors = ["Stephan Breimann <stephanbreimann@gmail.de>"]
 license = "MIT"
 readme = "README.rst"
 include = ["data/*.xlsx", "data/benchmarks/*.tsv", "data/benchmarks/*.xlsx"]
+
 # Add classifiers to provide more details about the package (used by PyPI)
 classifiers = [
     "Operating System :: OS Independent",
@@ -32,63 +33,73 @@ classifiers = [
     # 7 - Inactive (project no longer maintained)
 ]
 
-# Core Requirement
+# Core dependencies
 [tool.poetry.dependencies]
-python = ">=3.9,<=3.12"
+python = "^3.9"
 cycler = "^0.11.0"
 et-xmlfile = "^1.1.0"
 fonttools = "^4.37.1"
-joblib = "^1.1.0"
+Jinja2 = "^3.1.2"
+joblib = "^1.2.0"
 kiwisolver = "^1.4.4"
 matplotlib = "^3.5.3"
 numpy = "^1.24.4"
 openpyxl = "^3.0.10"
 packaging = "^21.3"
-pandas = ">=2.0.0"
+pandas = "^2.0.0"
 patsy = "^0.5.2"
 Pillow = "^10.0.1"
+pip = "^23.2.01"
 pyparsing = "^3.0.9"
 python-dateutil = "^2.8.2"
 pytz = "^2022.2.1"
-scikit-learn = "^1.1.2"
-scipy = "^1.9.0"
-seaborn = ">=0.11.2"
+scikit-learn = "^1.4"
+scipy = "^1.10.0"
+seaborn = "^0.11.2"
 six = "^1.16.0"
 statsmodels = "^0.13.2"
-threadpoolctl = "^3.1.0"
-pip = "^23.2.01"
-shap = "^0.44.0"
-ipython = "^8.16.1"
-UpSetPlot= "^0.8.0"
+threadpoolctl = "^3.1.0
 
-#... (keep the other dependencies as they are)
-[tool.poetry.dev-dependencies]
-sphinx = "5.3.0" #,<7.0   # Newest version not campatible with myst_nb
-sphinx_rtd_theme = "1.3.0" #"^1.3.0"
-sphinx-design = "0.5" #{ version = "^0.5", python = ">=3.8" }
-sphinx_copybutton = "0.5.2" #"^0.5.2"
-sphinxext-opengraph = "0.8.2" #"^0.8.2"
-sphinx-autodoc-typehints = "1.15.0" #"^1.15.0"
-docutils = "0.18.0"
-poetry = "1.6.1"
-urllib3 = "2.0.4"
-nbsphinx = "0.9.3"
-nbconvert = "7.8.0"
-nbformat = "5.9.2"
-ipykernel = "6.25.2"
-pandoc = "2.3"
-numpydoc = "1.5.0"
-pytest = "7.4.2"
-pytest-mpl = "0.16.1"
-hypothesis = "6.86.2"
-black = "22.12.0"
-# Install juypter locally (not included for RTD due to dependcy conflicts)
-#jupyter = "^1.0.0"
-#jsonschema = "^4.17.0"
+# Additional depdencies (professional & developer)
+# Install via pip install aaanalysis[pro] or aaanalysis[dev]
+[tool.poetry.extras]
+pro = [
+    "shap>=0.44.0",
+    "ipython>=8.16.1",
+    "hypothesis>=6.86.2",
+    "pytest>=7.4.2",
+    "UpSetPlot>=0.8.0"
+]
+dev = [
+    # Include 'pro' dependencies
+    "shap>=0.44.0",
+    "ipython>=8.16.1",
+    "hypothesis>=6.86.2",
+    "pytest>=7.4.2",
+    "UpSetPlot>=0.8.0",
+    # All 'dev' dependencies
+    "black==22.12.0",
+    "docutils==0.18.0",
+    "ipykernel==6.25.2",
+    "nbconvert>=7.8.0",
+    "nbformat>=5.9.2",
+    "nbsphinx==0.9.3",
+    "numpydoc==1.5.0",
+    "pandoc==2.3",
+    "poetry==1.6.1",
+    "pytest-mpl==0.16.1",
+    "sphinx==5.3.0",
+    "sphinx-autodoc-typehints==1.15.0",
+    "sphinx_copybutton==0.5.2",
+    "sphinx_design==0.5.0",
+    "sphinx_rtd_theme==1.3.0",
+    "sphinxext-opengraph==0.8.2",
+    "urllib3==2.0.4",
+]
 
-# Optional dependencies
-#[tool.poetry.extras]
-#plots = ["matplotlib", "seaborn"]
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"
 
 # Project URLs
 [tool.poetry.urls]
diff --git a/requirements.txt b/requirements.txt
index 83d68652..6755957e 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -4,6 +4,7 @@
 cycler>=0.11.0
 et-xmlfile>=1.1.0
 fonttools>=4.37.1
+Jinja2>=3.1.2
 joblib>=1.2.0
 kiwisolver>=1.4.4
 matplotlib>=3.5.3