attempting to update flows

.github/workflows/python-publish.yml

@@ -1,40 +1,34 @@
-# This workflow will upload a Python Package using Twine when a release is created
-# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
-
-# This workflow uses actions that are not certified by GitHub.
-# They are provided by a third-party and are governed by
-# separate terms of service, privacy policy, and support
-# documentation.
-
-name: Upload Python Package
+name: Publish Python Package
 
 on:
-  release:
-    types: [published]
-
-permissions:
-  contents: read
+  push:
+    tags:
+      - 'v*'  # Triggers the workflow on tag pushes that match the pattern v*
 
 jobs:
-  deploy:
-
+  build:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4  # Update to the latest version
+
     - name: Set up Python
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5  # Update to the latest version
       with:
         python-version: '3.x'
+
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install -r requirements.txt
         pip install build
+
     - name: Build package
       run: python -m build
-    - name: Publish package
-      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
-      with:
-        user: __token__
-        password: ${{ secrets.PYPI_API_TOKEN }}
+
+    - name: Publish to PyPI
+      env:
+        TWINE_USERNAME: __token__
+        TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
+      run: |
+        python -m pip install --upgrade twine
+        python -m twine upload dist/*

Examples/DICOMRTTool_Tutorial.ipynb

@@ -82,7 +82,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 1,
    "metadata": {
     "pycharm": {
      "name": "#%%\n"
@@ -147,7 +147,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 4,
    "metadata": {
     "pycharm": {
      "name": "#%%\n"
@@ -160,20 +160,11 @@
      "text": [
       "Zipped images already downloaded.\n",
       "Unzipping images...\n",
-      "Estimated unzip time is 2 minutes\n"
-     ]
-    },
-    {
-     "ename": "BadZipFile",
-     "evalue": "File is not a zip file",
-     "output_type": "error",
-     "traceback": [
-      "\u001B[1;31m---------------------------------------------------------------------------\u001B[0m",
-      "\u001B[1;31mBadZipFile\u001B[0m                                Traceback (most recent call last)",
-      "File \u001B[1;32m<timed exec>:19\u001B[0m, in \u001B[0;36m<module>\u001B[1;34m\u001B[0m\n",
-      "File \u001B[1;32mc:\\users\\b5anderson\\appdata\\local\\programs\\python\\python38\\lib\\zipfile.py:1269\u001B[0m, in \u001B[0;36mZipFile.__init__\u001B[1;34m(self, file, mode, compression, allowZip64, compresslevel, strict_timestamps)\u001B[0m\n\u001B[0;32m   1267\u001B[0m \u001B[38;5;28;01mtry\u001B[39;00m:\n\u001B[0;32m   1268\u001B[0m     \u001B[38;5;28;01mif\u001B[39;00m mode \u001B[38;5;241m==\u001B[39m \u001B[38;5;124m'\u001B[39m\u001B[38;5;124mr\u001B[39m\u001B[38;5;124m'\u001B[39m:\n\u001B[1;32m-> 1269\u001B[0m         \u001B[38;5;28;43mself\u001B[39;49m\u001B[38;5;241;43m.\u001B[39;49m\u001B[43m_RealGetContents\u001B[49m\u001B[43m(\u001B[49m\u001B[43m)\u001B[49m\n\u001B[0;32m   1270\u001B[0m     \u001B[38;5;28;01melif\u001B[39;00m mode \u001B[38;5;129;01min\u001B[39;00m (\u001B[38;5;124m'\u001B[39m\u001B[38;5;124mw\u001B[39m\u001B[38;5;124m'\u001B[39m, \u001B[38;5;124m'\u001B[39m\u001B[38;5;124mx\u001B[39m\u001B[38;5;124m'\u001B[39m):\n\u001B[0;32m   1271\u001B[0m         \u001B[38;5;66;03m# set the modified flag so central directory gets written\u001B[39;00m\n\u001B[0;32m   1272\u001B[0m         \u001B[38;5;66;03m# even if no files are added to the archive\u001B[39;00m\n\u001B[0;32m   1273\u001B[0m         \u001B[38;5;28mself\u001B[39m\u001B[38;5;241m.\u001B[39m_didModify \u001B[38;5;241m=\u001B[39m \u001B[38;5;28;01mTrue\u001B[39;00m\n",
-      "File \u001B[1;32mc:\\users\\b5anderson\\appdata\\local\\programs\\python\\python38\\lib\\zipfile.py:1336\u001B[0m, in \u001B[0;36mZipFile._RealGetContents\u001B[1;34m(self)\u001B[0m\n\u001B[0;32m   1334\u001B[0m     \u001B[38;5;28;01mraise\u001B[39;00m BadZipFile(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mFile is not a zip file\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n\u001B[0;32m   1335\u001B[0m \u001B[38;5;28;01mif\u001B[39;00m \u001B[38;5;129;01mnot\u001B[39;00m endrec:\n\u001B[1;32m-> 1336\u001B[0m     \u001B[38;5;28;01mraise\u001B[39;00m BadZipFile(\u001B[38;5;124m\"\u001B[39m\u001B[38;5;124mFile is not a zip file\u001B[39m\u001B[38;5;124m\"\u001B[39m)\n\u001B[0;32m   1337\u001B[0m \u001B[38;5;28;01mif\u001B[39;00m \u001B[38;5;28mself\u001B[39m\u001B[38;5;241m.\u001B[39mdebug \u001B[38;5;241m>\u001B[39m \u001B[38;5;241m1\u001B[39m:\n\u001B[0;32m   1338\u001B[0m     \u001B[38;5;28mprint\u001B[39m(endrec)\n",
-      "\u001B[1;31mBadZipFile\u001B[0m: File is not a zip file"
+      "Estimated unzip time is 2 minutes\n",
+      "Done unzipping images.\n",
+      "All required files downloaded and unzipped!\n",
+      "CPU times: total: 31.8 s\n",
+      "Wall time: 36.1 s\n"
      ]
     }
    ],
@@ -296,8 +287,7 @@
    "metadata": {
     "pycharm": {
      "name": "#%%\n"
-    },
-    "scrolled": false
+    }
    },
    "outputs": [],
    "source": [
@@ -313,8 +303,7 @@
    "metadata": {
     "pycharm": {
      "name": "#%%\n"
-    },
-    "scrolled": false
+    }
    },
    "outputs": [
     {
@@ -507,8 +496,7 @@
    "metadata": {
     "pycharm": {
      "name": "#%%\n"
-    },
-    "scrolled": false
+    }
    },
    "outputs": [],
    "source": [
@@ -1164,9 +1152,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.8.0"
   }
  },
  "nbformat": 4,
  "nbformat_minor": 4
-}
+}

MANIFEST.in

@@ -5,3 +5,4 @@ recursive-include src *.dcm
 recursive-include src *.ipynb
 recursive-include src *.py
 recursive-include src *.txt
+include requirements.txt

requirements.txt

@@ -14,5 +14,5 @@ check-manifest
 tqdm~=4.64.0
 pytest
 
-PlotScrollNumpyArrays~=0.0.1
+PlotScrollNumpyArrays
 setuptools~=62.1.0