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labs update1
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Candace Moore authored and Candace Moore committed Jun 22, 2024
1 parent 59b77a5 commit 938a896
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Showing 2 changed files with 217 additions and 3 deletions.
87 changes: 85 additions & 2 deletions notebooks/experi/labs.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -66,6 +66,73 @@
"lab_data2['studieID'].unique()"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "ad76d432-1819-4181-b7f9-eb4797bf1d62",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"set_2023 = set(['BRICK-001', 'BRICK-002', 'BRICK-003', 'BRICK-004', 'BRICK-005',\n",
" 'BRICK-006', 'BRICK-007', 'BRICK-008', 'BRICK-009', 'BRICK-010',\n",
" 'BRICK-011', 'BRICK-012', 'BRICK-013', 'BRICK-014', 'BRICK-015',\n",
" 'BRICK-016', 'BRICK-017', 'BRICK-018', 'BRICK-019', 'BRICK-021',\n",
" 'BRICK-024', 'BRICK-025', 'BRICK-026', 'BRICK-027', 'BRICK-028',\n",
" 'BRICK-029', 'BRICK-030', 'BRICK-031', 'BRICK-032', 'BRICK-033',\n",
" 'BRICK-035', 'BRICK-037', 'BRICK-038', 'BRICK-039', 'BRICK-040',\n",
" 'BRICK-041', 'BRICK-042', 'BRICK-044', 'BRICK-047', 'BRICK-048',\n",
" 'BRICK-049', 'BRICK-050', 'BRICK-051', 'BRICK-052', 'BRICK-053',\n",
" 'BRICK-054', 'BRICK-056', 'BRICK-058'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "ca376f25-fc91-47b8-a84f-9c7d4214b257",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"set_2024 = set(['BRICK-052', 'BRICK-053', 'BRICK-058', 'BRICK-056', 'BRICK-055',\n",
" 'BRICK-054', 'BRICK-027', 'BRICK-031', 'BRICK-028', 'BRICK-024',\n",
" 'BRICK-037', 'BRICK-025', 'BRICK-029', 'BRICK-019', 'BRICK-011',\n",
" 'BRICK-050', 'BRICK-026', 'BRICK-003', 'BRICK-030', 'BRICK-040',\n",
" 'BRICK-002', 'BRICK-014', 'BRICK-004', 'BRICK-042', 'BRICK-047',\n",
" 'BRICK-012', 'BRICK-051', 'BRICK-041', 'BRICK-010', 'BRICK-044',\n",
" 'BRICK-017', 'BRICK-001', 'BRICK-006', 'BRICK-018', 'BRICK-035',\n",
" 'BRICK-049', 'BRICK-016', 'BRICK-015', 'BRICK-048', 'BRICK-023',\n",
" 'BRICK-043', 'BRICK-005', 'BRICK-033', 'BRICK-008', 'BRICK-013',\n",
" 'BRICK-038', 'BRICK-039'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "0c271158-c559-4865-9407-d3944412d839",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"len(set_2023)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "2d296ff1-0d7d-46a4-ac88-b8e1f2e4b6ee",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"intersection = set_2023.intersection(set_2024)\n",
"print(intersection)"
]
},
{
"cell_type": "markdown",
"id": "5",
Expand Down Expand Up @@ -596,7 +663,9 @@
"cell_type": "code",
"execution_count": null,
"id": "49",
"metadata": {},
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"#final_df"
Expand All @@ -614,6 +683,18 @@
"final_df.head(3)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "b8e04bf1-d8e6-4f1b-84dc-618222858c6a",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"final_df"
]
},
{
"cell_type": "code",
"execution_count": null,
Expand Down Expand Up @@ -660,7 +741,9 @@
"cell_type": "code",
"execution_count": null,
"id": "55",
"metadata": {},
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"updates.columns"
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133 changes: 132 additions & 1 deletion notebooks/experi/labs2.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -92,6 +92,18 @@
"len(lab_data['studieID'].unique())"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "598f35f7-8df1-435b-b159-cd4730f80930",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"#set(lab_data['studieID'].unique())"
]
},
{
"cell_type": "markdown",
"id": "7",
Expand Down Expand Up @@ -625,6 +637,26 @@
"final_df.shape"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "e7b3070e-247a-4cb3-ad5d-dfa262c0e1f7",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"final_df"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "35b5d282-c355-4d24-a037-fea21c323a8d",
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "code",
"execution_count": null,
Expand All @@ -637,6 +669,18 @@
"final_df.head(30)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "36b55f97-e328-4226-87c5-1956838007b8",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"30*1582"
]
},
{
"cell_type": "code",
"execution_count": null,
Expand All @@ -646,7 +690,94 @@
},
"outputs": [],
"source": [
"final_df.to_csv('full_labs_UPDATES.csv')"
"final_df.to_csv('../../secret_data/full_labs_UPDATES_assembled_22_6_2024.csv')"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "316dd391-35aa-4882-ab5b-3c724e198612",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"final_df.head(3)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "bd74bd62-3f8c-4c95-a59b-9b88e39c1498",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"df = pd.read_csv('../../secret_data/full_labs_UPDATES_assembled_22_6_2024.csv', index_col=1)\n",
"df"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "5a41d76e-2af2-41a6-9e88-81f307a7d2d6",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"df = df.drop('Unnamed: 0', axis=1)\n",
"df"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "cf2c3b14-9f8e-4293-a7bd-826b98b89315",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"df.columns"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "4d94d7e6-9fe0-4bcb-a5c1-1d3fe7d2e80f",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"df.to_csv('../../secret_data/castor_ready_labs_from_2023_made_22_6_2024.csv')"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "f3cf5d0d-6ada-4ad5-bd29-9100e17cac84",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"df_top = df[:15]\n",
"df_top"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "e4d686ba-1a40-438f-9d0e-6f6425853262",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"df_top.to_csv('../../secret_data/castor_ready_labs_first_third_from_2023_made_22_6_2024.csv')"
]
},
{
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