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* setup for vis-network * suppress error * wip - new graph component * fit graph * notes
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,12 +1,10 @@ | ||
| let plugins = [] | ||
| let plugins = []; | ||
|
|
||
| if (process.env.NODE_ENV === 'production') { | ||
| plugins.push('transform-remove-console') | ||
| if (process.env.NODE_ENV === "production") { | ||
| plugins.push("transform-remove-console"); | ||
| } | ||
|
|
||
| module.exports = { | ||
| presets: [ | ||
| '@vue/app' | ||
| ], | ||
| plugins | ||
| } | ||
| presets: ["@vue/app", "@babel/preset-env"], | ||
| plugins, | ||
| }; |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,185 @@ | ||
| <template> | ||
| <div class="network-container"> | ||
| <div | ||
| v-show="!loading && !stabilizing" | ||
| ref="networkContainer" | ||
| class="vis-network" | ||
| ></div> | ||
| <div v-if="loading" class="loading">Loading data...</div> | ||
| <div v-if="stabilizing" class="stabilization-progress"> | ||
| <div class="progress-bar"> | ||
| <div | ||
| class="progress-fill" | ||
| :style="{ width: `${stabilizationProgress}%` }" | ||
| ></div> | ||
| </div> | ||
| <div class="progress-text"> | ||
| Stabilizing: {{ Math.round(stabilizationProgress) }}% | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </template> | ||
| <script> | ||
| import Vue from "vue"; | ||
| import { Network } from "vis-network"; | ||
| import { DataSet } from "vis-data"; | ||
| export default Vue.component("NetworkGraph", { | ||
| //props: phenotype, sigma and geneset size | ||
| data() { | ||
| return { | ||
| network: null, | ||
| loading: false, | ||
| stabilizing: false, | ||
| stabilizationProgress: 0, | ||
| nodes: new DataSet([]), | ||
| edges: new DataSet([]), | ||
| }; | ||
| }, | ||
| async mounted() { | ||
| await this.$nextTick(); | ||
| await this.fetchGraphData(); | ||
| }, | ||
| beforeDestroy() { | ||
| if (this.network) { | ||
| this.network.destroy(); | ||
| } | ||
| }, | ||
| methods: { | ||
| async fetchGraphData() { | ||
| this.loading = true; | ||
| try { | ||
| const response = await fetch( | ||
| "https://bioindex-dev.hugeamp.org/api/bio/query/pigean-graph?q=T2D,2,small" | ||
| ); | ||
| const data = await response.json(); | ||
| this.nodes.clear(); | ||
| this.edges.clear(); | ||
| this.nodes.add(data.data[0].nodes); | ||
| this.edges.add(data.data[0].edges); | ||
| await this.$nextTick(); | ||
| await this.initNetwork(); | ||
| // Initial fit after data load | ||
| if (this.network) { | ||
| this.network.fit({ | ||
| animation: false, | ||
| }); | ||
| } | ||
| } catch (error) { | ||
| console.error("Error:", error); | ||
| } finally { | ||
| this.loading = false; | ||
| } | ||
| }, | ||
| initNetwork() { | ||
| if (!this.$refs.networkContainer) return; | ||
| const container = this.$refs.networkContainer; | ||
| const data = { | ||
| nodes: this.nodes, | ||
| edges: this.edges, | ||
| }; | ||
| const options = { | ||
| physics: { | ||
| enabled: true, | ||
| stabilization: { | ||
| enabled: true, | ||
| iterations: 100, | ||
| updateInterval: 50, | ||
| fit: true, | ||
| }, | ||
| }, | ||
| }; | ||
| this.network = new Network(container, data, options); | ||
| // Add stabilization events | ||
| this.network.on("startStabilizing", () => { | ||
| this.stabilizing = true; | ||
| }); | ||
| this.network.on("stabilizationProgress", (params) => { | ||
| this.stabilizationProgress = | ||
| (params.iterations / params.total) * 100; | ||
| }); | ||
| this.network.on("stabilizationIterationsDone", () => { | ||
| this.stabilizing = false; | ||
| this.stabilizationProgress = 100; | ||
| this.network.setOptions({ physics: false }); | ||
| // Final fit after stabilization with animation | ||
| setTimeout(() => { | ||
| if (this.network) { | ||
| this.network.fit({ | ||
| animation: { | ||
| duration: 1000, | ||
| easingFunction: "easeInOutQuad", | ||
| }, | ||
| scale: 1.2, // Zoom out slightly more | ||
| }); | ||
| } | ||
| }, 500); | ||
| }); | ||
| }, | ||
| }, | ||
| }); | ||
| </script> | ||
|
|
||
| <style scoped> | ||
| .network-container { | ||
| position: relative; | ||
| width: 100%; | ||
| height: 400px; | ||
| } | ||
| .stabilization-progress { | ||
| position: absolute; | ||
| top: 50%; | ||
| left: 50%; | ||
| transform: translate(-50%, -50%); | ||
| width: 300px; | ||
| text-align: center; | ||
| background: rgba(255, 255, 255, 0.9); | ||
| padding: 20px; | ||
| border-radius: 8px; | ||
| box-shadow: 0 2px 8px rgba(0, 0, 0, 0.1); | ||
| } | ||
| .progress-bar { | ||
| width: 100%; | ||
| height: 20px; | ||
| background: #f0f0f0; | ||
| border-radius: 10px; | ||
| overflow: hidden; | ||
| margin-bottom: 10px; | ||
| } | ||
| .progress-fill { | ||
| height: 100%; | ||
| background: #4caf50; | ||
| transition: width 0.3s ease; | ||
| } | ||
| .progress-text { | ||
| color: #333; | ||
| font-size: 14px; | ||
| } | ||
| .vis-network { | ||
| width: 100%; | ||
| height: 100%; | ||
| border: 1px solid #ddd; | ||
| } | ||
| .loading { | ||
| position: absolute; | ||
| top: 50%; | ||
| left: 50%; | ||
| transform: translate(-50%, -50%); | ||
| } | ||
| </style> |
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