v0.6.2
What's Changed
New Features
- Use Google Cloud Public Datasets as default source for public resources by @nawatts in #431
- Add options for reading public resources from Registry of Open Data on AWS and Azure Open Datasets by @nawatts in #430
- Allow setting the default source for public resources with an environment variable by @nawatts in #435
- Use hl.utils.guess_cloud_spark_provider to set default resources source by @nawatts in #436
- add checkpoint option to get_qc_mt by @klaricch in #437
- Modification to the
annotate_sex
pipeline to allow sex ploidy estimation using only variants instead of ref blocks by @jkgoodrich in #445
Other Changes
- Document selecting resource source by @nawatts in #408
- Add VEP 101 init by @jkgoodrich in #411
- Small fix to docstrings for make_freq_index_dict() by @gtiao in #412
- Tiny fix to assign_population_pcs use of known label by @jkgoodrich in #413
- Added option to get file stats for requester-pays files by @ch-kr in #414
- fix to faf description text by @jkgoodrich in #415
- Update current gnomAD GRCh38 genome release v3.1.2 by @jkgoodrich in #416
- Update to new RouterAsyncFS interface in Hail 0.2.79 by @nawatts in #425
- add vds resource by @klaricch in #423
- Modified subset_samples_and_variants() by @wlu04 in #421
- Modified compute_stratified_sample_qc() by @wlu04 in #420
- Modified annotate_sex() by @wlu04 in #427
New Contributors
Full Changelog: v0.6.0...v0.6.2