Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

trans interaction #160

Open
cora97846 opened this issue Sep 28, 2024 · 1 comment
Open

trans interaction #160

cora97846 opened this issue Sep 28, 2024 · 1 comment

Comments

@cora97846
Copy link

Hello, trans interaction analysis should use the following model.
python3 -m tensorqtl ${plink_prefix_path} ${expression_bed} ${prefix}
--covariates ${covariates_file}
--interaction ${interactions_file}
--best_only
--mode trans
But when I tried to analyze it, I found that the error message kept showing
can't allocate memory: you tried to allocate 742739225424 bytes. Error code 12 (Cannot allocate memory)
Although I increased the memory to very large, I would like to ask if the trans interaction analysis requires a large amount of memory?
Thank you in advance

@francois-a
Copy link
Collaborator

Yes this can produce very large outputs/memory requirements depending on the inputs, but this seems excessive. How large are your inputs?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants