Version 1.4.5

-Added functionality for logging directory to be OS-dependent. This
allows logs for local testing to be based on widdler directory but
to be in centralized location for production.

README.md

@@ -628,6 +628,8 @@ convenient identification.
    2017-07-14 12:10:44,813 - widdler - INFO - 
    -------------End Widdler Execution by amr-------------
    ```
+
+Widdler logs can be found in /cil/shed/resources/widdler/logs
 
 ## Known Issues
 

src/config.py

@@ -1,7 +1,13 @@
 import os
+import sys
 
 servers = ['ale', 'btl-cromwell', 'localhost', 'gscid-cromwell']
 resource_dir = os.path.abspath(os.path.dirname(__file__)).replace('src', 'resources')
-log_dir = os.path.abspath(os.path.dirname(__file__)).replace('src', 'logs')
+
+if sys.platform == 'win32':
+    log_dir = os.path.abspath(os.path.dirname(__file__)).replace('src', 'logs')
+else:
+    log_dir = "/cil/shed/resources/widdler/logs/"
 run_states = ['Running', 'Submitted', 'QueuedInCromwell']
 terminal_states = ['Failed', 'Aborted', 'Succeeded']
+

widdler.py

@@ -23,7 +23,7 @@
 __copyright__ = "Copyright 2017, The Broad Institute"
 __credits__ = ["Amr Abouelleil", "Paul Cao", "Jean Chang"]
 __license__ = "GPL"
-__version__ = "1.4.4"
+__version__ = "1.4.5"
 __maintainer__ = "Amr Abouelleil"
 __email__ = "amr@broadinstitute.org"
 __status__ = "Production"