From ea7e8a55a05cdf5a7ba155dc4467ac2fea880225 Mon Sep 17 00:00:00 2001 From: Giovanni Squillero Date: Fri, 25 Aug 2023 13:04:23 +0200 Subject: [PATCH] XOver almost working, oh yeah! --- byron/__init__.py | 6 +- byron/classes/evaluator.py | 12 + byron/classes/individual.py | 2 - byron/classes/parameter.py | 9 +- byron/classes/selement.py | 2 +- .../framework/parameter_structural_global.py | 6 +- byron/registry.py | 12 +- docs/paranoia.md | 9 +- examples/onemax/onemax-go/golang.py | 10 +- examples/onemax/onemax-go/onemax-go.py | 53 +-- .../evolution/genetic-operators.ipynb | 2 +- experiments/exceptions.ipynb | 4 +- experiments/g.ipynb | 2 +- experiments/h.ipynb | 2 +- experiments/i.ipynb | 2 +- poetry.lock | 301 ++++++++++-------- 16 files changed, 218 insertions(+), 216 deletions(-) diff --git a/byron/__init__.py b/byron/__init__.py index 96e4c21..1ff4c2b 100644 --- a/byron/__init__.py +++ b/byron/__init__.py @@ -114,7 +114,7 @@ __welcome__ = ( f'[bold]This is Byron v{__version__.rsplit(".", maxsplit=1)[0]} "[italic]{__codename__}[/italic]"[/]\n' - + f"[bold](c) 2023 G. Squillero & A. Tonda — Licensed under Apache-2.0[/]" + + f"[bold]© 2023 G. Squillero & A. Tonda — Licensed under Apache-2.0[/]" ) @@ -142,7 +142,7 @@ def welcome(level=logging.DEBUG): or not main_process or user_messages.performance_warning( "Paranoia checks are enabled in this notebook: performances can be significantly impaired\n" - + "[see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]" + + "[see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]" ) ) elif not notebook_mode: @@ -151,7 +151,7 @@ def welcome(level=logging.DEBUG): or not main_process or user_messages.performance_warning( "Paranoia checks are enabled: performances can be significantly impaired — consider using '-O'\n" - + "[see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]" + + "[see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]" ) ) diff --git a/byron/classes/evaluator.py b/byron/classes/evaluator.py index 28f89b6..e87a2ce 100644 --- a/byron/classes/evaluator.py +++ b/byron/classes/evaluator.py @@ -242,6 +242,9 @@ def __str__(self): def evaluate_population(self, population: Population) -> None: individuals = [(i, I, self.cook(population.dump_individual(i))) for i, I in population.not_finalized] + if not individuals: + logger.debug(f"PythonEvaluator: All individuals have already been finalized") + return if self._max_workers == 1 or not self._backend: # Simple, sequential, Python evaluator @@ -398,6 +401,9 @@ def evaluate_population(self, population: Population) -> None: if not g.is_finalized: indexes.append(i) phenotypes.append(self.cook(population.dump_individual(i))) + if not indexes: + logger.debug(f"MakefileEvaluator: All individuals have already been finalized") + return with ThreadPoolExecutor(max_workers=self._max_workers, thread_name_prefix="byron$") as pool: for i, result in zip(indexes, pool.map(self._evaluate, phenotypes)): @@ -473,6 +479,9 @@ def __str__(self): def evaluate_population(self, population: Population) -> None: individuals = population.not_finalized + if not individuals: + logger.debug(f"ScriptEvaluator: All individuals have already been finalized") + return files = list() for idx, ind in individuals: self._fitness_calls += 1 @@ -630,6 +639,9 @@ def evaluate_population(self, population: Population) -> None: if not g.is_finalized: indexes.append(i) phenotypes.append(self.cook(population.dump_individual(i))) + if not indexes: + logger.debug(f"ParallelScriptEvaluator: All individuals have already been finalized") + return with ThreadPoolExecutor(max_workers=self._max_workers, thread_name_prefix="byron$") as pool: for i, result in zip(indexes, pool.map(self._evaluate, phenotypes)): diff --git a/byron/classes/individual.py b/byron/classes/individual.py index 409c9d2..e6a4d44 100644 --- a/byron/classes/individual.py +++ b/byron/classes/individual.py @@ -327,8 +327,6 @@ def _structure_tree(self) -> nx.DiGraph: # PUBLIC METHODS def run_paranoia_checks(self) -> bool: - assert self.valid, f"{PARANOIA_VALUE_ERROR}: Individual {self!r} is not valid" - # ==[check genome (structural)]====================================== assert self.genome == self._genome, f"{PARANOIA_VALUE_ERROR}: Panic!" assert self.genome == self.G, f"{PARANOIA_VALUE_ERROR}: Panic!" diff --git a/byron/classes/parameter.py b/byron/classes/parameter.py index 3dd006b..8ca2def 100644 --- a/byron/classes/parameter.py +++ b/byron/classes/parameter.py @@ -145,7 +145,7 @@ def is_fastened(self) -> bool: def value(self): assert ( self.is_fastened - ), f"{PARANOIA_VALUE_ERROR}: Attempt to retrieve the value of an unfastened structural parameter" + ), f"{PARANOIA_VALUE_ERROR}: Attempt to access the value of an unfastened structural parameter" if self._node_reference is None: return None return next( @@ -154,8 +154,13 @@ def value(self): ) @value.setter - def value(self, target_node): + def value(self, target): old_target_node = self.value + if isinstance(target, NodeReference): + target_node = target.node + assert target.graph == self._node_reference.graph, f"{PARANOIA_VALUE_ERROR}: Graph mismatch" + else: + target_node = target if old_target_node is not None: self._node_reference.graph.remove_edge(self._node_reference.node, old_target_node, self.key) if target_node is not None: diff --git a/byron/classes/selement.py b/byron/classes/selement.py index 4587850..cf98ca6 100644 --- a/byron/classes/selement.py +++ b/byron/classes/selement.py @@ -177,7 +177,7 @@ def _is_valid_debug(self, node_ref: 'NodeReference') -> None: check_result = True for f in self.__class__.NODE_CHECKS: if not f(node_ref): - logger.info(f"{PARANOIA_SYSTEM_ERROR}: Failed check {f.__qualname__}({node_ref})") + logger.info(f"{PARANOIA_SYSTEM_ERROR}: Failed check {f}({node_ref})") check_result = False return check_result diff --git a/byron/framework/parameter_structural_global.py b/byron/framework/parameter_structural_global.py index 52218b2..d79baf6 100644 --- a/byron/framework/parameter_structural_global.py +++ b/byron/framework/parameter_structural_global.py @@ -102,10 +102,14 @@ def mutate(self, strength: float = 1.0) -> None: else: target = rrandom.choice(potential_targets, self.value, sigma=strength) if target is None: + # get_all_macros(G, root=f, data=False, node_id=True) new_node = unroll_selement(self._target_frame, self._node_reference.graph) self._node_reference.graph.add_edge(NODE_ZERO, new_node.node, _type=FRAMEWORK) initialize_subtree(new_node) - target = new_node.node + if first_macro: + target = get_all_macros(new_node.graph, root=new_node.node, data=False, node_id=True)[0] + else: + target = new_node.node if not target: raise ByronOperatorFailure diff --git a/byron/registry.py b/byron/registry.py index 9ce1c72..c3de689 100644 --- a/byron/registry.py +++ b/byron/registry.py @@ -164,15 +164,9 @@ def wrapper(*args: Individual | FrameABC, **kwargs): offspring = func(*args, **kwargs) except ByronOperatorFailure: offspring = list() - - if offspring is None: - offspring = [] - elif isinstance(offspring, Individual): - deprecation_warning( - f"Genetic operators should return list[Individual]: found {func.__qualname__} -> Individual", - stacklevel_offset=0, - ) - offspring = [offspring] + else: + if offspring is None: + offspring = [] assert all( isinstance(i, Individual) for i in offspring diff --git a/docs/paranoia.md b/docs/paranoia.md index 68f8f3f..1b91b17 100644 --- a/docs/paranoia.md +++ b/docs/paranoia.md @@ -1,5 +1,10 @@ # PARANOID MODE +> All day long I think of things +> But nothing seems to satisfy +> Think I'll lose my mind if I don't +> Find something to pacify +> > Can you help me occupy my brain? > Oh, yeah @@ -72,9 +77,9 @@ import byron * :-1: All the code must be packed into one single cell * :-1: Byron will not detect Jupyter anymore -### Tamper with the bytecode cache +### :bomb: Tamper with the bytecode cache -:warning: This hack may cause your system to become unstable and/or provide incorrect results. You acknowledge that you are solely responsible for any harm or damage that may result from it. +:warning: This hack may cause your system to become unstable and provide incorrect results. You acknowledge that you are solely responsible for any harm or damage that may result. * Generate the optimized bytecode (e.g., run `python -O -m pytest`) * Locate all the folders that contain compiled bytecode (e.g., `**/__pycache__`) diff --git a/examples/onemax/onemax-go/golang.py b/examples/onemax/onemax-go/golang.py index d230986..090a2fd 100755 --- a/examples/onemax/onemax-go/golang.py +++ b/examples/onemax/onemax-go/golang.py @@ -28,7 +28,6 @@ def framework(): # standard main_prologue = byron.f.macro('package main\nfunc evolved_function() uint64 {{') - main_prologue.baptize('prologue') imath = byron.f.macro( '{var} {op}= {num}', var=byron.f.global_reference(variable, creative_zeal=1), @@ -42,12 +41,16 @@ def framework(): var2=(byron.f.global_reference(variable)), var3=(byron.f.global_reference(variable)), ) + # NOTE[GX]: in macro definition "name='prologue'"" would be considered an (illegal) parameter + main_epilogue = byron.f.macro('return {var}\n}}', var=byron.f.global_reference(variable)) + main_prologue.baptize('prologue') + main_epilogue.baptize('epilogue') # proc subs_prologue = byron.f.macro('func {_node}(foo uint64) uint64 {{', _label='') subs_math = byron.f.macro('foo {op}= {num}', op=math_op, num=int64) subs_epilogue = byron.f.macro('return foo\n}}') - subs = byron.f.sequence([subs_prologue, byron.f.bunch([subs_math], size=2), subs_epilogue]) + subs = byron.f.sequence([subs_prologue, byron.f.bunch([subs_math], size=2), subs_epilogue], name='function') call = byron.f.macro( '{var1} = {sub}({var2})', @@ -56,6 +59,5 @@ def framework(): var2=byron.f.global_reference(variable), ) - code = byron.f.bunch([imath, vmath, call], size=5) - main_epilogue = byron.f.macro('return {var}\n}}', var=byron.f.global_reference(variable)) + code = byron.f.bunch([imath, vmath, call], size=5, name='body') return byron.f.sequence((main_prologue, code, main_epilogue), max_instances=1) diff --git a/examples/onemax/onemax-go/onemax-go.py b/examples/onemax/onemax-go/onemax-go.py index c42fcae..b359699 100755 --- a/examples/onemax/onemax-go/onemax-go.py +++ b/examples/onemax/onemax-go/onemax-go.py @@ -11,66 +11,19 @@ # SPDX-License-Identifier: Apache-2.0 import logging -import platform import argparse import byron - -def define_library(): - byron.f.set_parameter('_comment', '//') - byron.f.set_option('$dump_node_info', False) - - # The parameter '{_byron}' can be used to get information on the current system. Available fields are: - # 'version', 'system', 'machine', 'python', and 'networkx' - # To get all information use the macro 'byron.f.Info' - - int64 = byron.f.integer_parameter(0, 2**64) - math_op = byron.f.choice_parameter(['+', '-', '*', '/', '&', '^', '|']) - variable = byron.f.macro('var {_node} uint64', _label='') - variable.force_parent('prologue') - - # standard - main_prologue = byron.f.macro('package main\nfunc evolved_function() uint64 {{') - main_prologue.baptize('prologue') - imath = byron.f.macro( - '{var} {op}= {num}', - var=byron.f.global_reference(variable, creative_zeal=1), - op=math_op, - num=int64, - ) - vmath = byron.f.macro( - '{var1} = {var2} {op} {var3}', - var1=(byron.f.global_reference(variable, creative_zeal=1, first_macro=True)), - op=math_op, - var2=(byron.f.global_reference(variable)), - var3=(byron.f.global_reference(variable)), - ) - - # proc - subs_prologue = byron.f.macro('func {_node}(foo uint64) uint64 {{', _label='') - subs_math = byron.f.macro('foo {op}= {num}', op=math_op, num=int64) - subs_epilogue = byron.f.macro('return foo\n}}') - subs = byron.f.sequence([subs_prologue, byron.f.bunch([subs_math], size=3), subs_epilogue]) - - call = byron.f.macro( - '{var1} = {sub}({var2})', - var1=byron.f.global_reference(variable), - sub=byron.f.global_reference(subs, creative_zeal=1, first_macro=True), - var2=byron.f.global_reference(variable), - ) - - code = byron.f.bunch([imath, vmath, call], size=10) - main_epilogue = byron.f.macro('return {var}\n}}', var=byron.f.global_reference(variable)) - return byron.f.sequence((main_prologue, code, main_epilogue)) +import golang def main(): - top_frame = define_library() + top_frame = golang.framework() evaluator = byron.evaluator.ScriptEvaluator('./evaluate-all.sh', filename_format="individual{i:06}.go") # evaluator = byron.evaluator.ParallelScriptEvaluator( - # 'go', 'onemax.go', other_required_files=('main.go',), flags=('run',), timeout=10, default_result='0' + # 'go', 'onemax.go', other_required_files=('main.go',), flags=('run',), timeout=10, default_result='-1' # ) byron.f.set_option('$dump_node_info', True) diff --git a/examples/tutorials/evolution/genetic-operators.ipynb b/examples/tutorials/evolution/genetic-operators.ipynb index f9f3cc0..0a90171 100644 --- a/examples/tutorials/evolution/genetic-operators.ipynb +++ b/examples/tutorials/evolution/genetic-operators.ipynb @@ -27,7 +27,7 @@ "text": [ "/var/folders/31/dkl97hks2c14b663vl55pt440000gn/T/ipykernel_12399/1429530752.py:1: ByronPerformanceWarning: \n", " Paranoia checks are enabled in this notebook: performances can be significantly impaired\n", - " [see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]\n", + " [see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]\n", " import byron\n" ] } diff --git a/experiments/exceptions.ipynb b/experiments/exceptions.ipynb index c7e7c0c..bb288aa 100644 --- a/experiments/exceptions.ipynb +++ b/experiments/exceptions.ipynb @@ -27,7 +27,7 @@ "text": [ "/var/folders/31/dkl97hks2c14b663vl55pt440000gn/T/ipykernel_17807/1429530752.py:1: RuntimeWarning: \n", " Paranoia checks are enabled in this notebook: performances can be significantly impaired\n", - " [see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]\n", + " [see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]\n", " import byron\n" ] } @@ -52,7 +52,7 @@ "output_type": "stream", "text": [ "15:00:50 ▷ INFO ▷ byron::🖋: This is Byron v4!2.0a0.dev1 \"Meaning of Liff\"\n", - "15:00:50 ▷ INFO ▷ byron::🖋: (c) 2023 G. Squillero & A. Tonda — Licensed under Apache-2.0\n" + "15:00:50 ▷ INFO ▷ byron::🖋: © 2023 G. Squillero & A. Tonda — Licensed under Apache-2.0\n" ] } ], diff --git a/experiments/g.ipynb b/experiments/g.ipynb index 0b6c72b..8140c26 100644 --- a/experiments/g.ipynb +++ b/experiments/g.ipynb @@ -25,7 +25,7 @@ "text": [ "/var/folders/31/dkl97hks2c14b663vl55pt440000gn/T/ipykernel_4216/1429530752.py:1: ByronPerformanceWarning: \n", " Paranoia checks are enabled in this notebook: performances can be significantly impaired\n", - " [see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]\n", + " [see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]\n", " import byron\n" ] } diff --git a/experiments/h.ipynb b/experiments/h.ipynb index da158bc..867bf4a 100644 --- a/experiments/h.ipynb +++ b/experiments/h.ipynb @@ -25,7 +25,7 @@ "text": [ "/var/folders/31/dkl97hks2c14b663vl55pt440000gn/T/ipykernel_7764/1429530752.py:1: ByronPerformanceWarning: \n", " Paranoia checks are enabled in this notebook: performances can be significantly impaired\n", - " [see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]\n", + " [see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]\n", " import byron\n" ] } diff --git a/experiments/i.ipynb b/experiments/i.ipynb index 13e6b6e..c2a5458 100644 --- a/experiments/i.ipynb +++ b/experiments/i.ipynb @@ -25,7 +25,7 @@ "text": [ "/var/folders/31/dkl97hks2c14b663vl55pt440000gn/T/ipykernel_6777/826285489.py:1: ByronPerformanceWarning: \n", " Paranoia checks are enabled in this notebook: performances can be significantly impaired\n", - " [see https://github.com/cad-polito-it/byron/blob/pre-alpha/docs/paranoia.md for details]\n", + " [see https://github.com/cad-polito-it/byron/blob/alpha/docs/paranoia.md for details]\n", " import byron\n" ] } diff --git a/poetry.lock b/poetry.lock index a267018..f4eae9d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1346,79 +1346,115 @@ files = [ [[package]] name = "kiwisolver" -version = "1.4.4" +version = 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