BaitsTools version 1.8.1

• Default gem build no longer includes baitstoolsgui
• gui option during gem build adds baitstoolsgui to gem

BaitsTools version 1.8.0

• Changes handling of variant haplotype definition for alignment-derived baits in aln2baits and pyrad2baits. Now returns up to a set number of randomly permuted variant baits per window.
• New variable --maxvars added across program to control the number of permuted variants.

BaitsTools version 1.7.8

• Fixed bugs in the --shuffle option for tilebaits and aln2baits
• Fixed an infinite hang in aln2baits when using the variant haplotype definition

NOTE: The variant haplotype definition does not output all variants as intended (only a subset). The code is also extremely inefficient. This is being addressed in the 1.8.0-development branch.

BaitsTools version 1.7.7

• Fixed bug in aln2baits that caused crash when using "variants" haplotype definition
• Updated gem to latest version

BaitsTools version 1.7.6

• Fixed minor bug in checkbaits omitting the word 'bp' from progress printed to the screen

BaitsTools version 1.7.5

Fixed a bug in baitstoolsgui that called the deprecated baitstools.rb executable

BaitsTools version 1.7.4

Conversion to Ruby gem format

BaitsTools version 1.7.3

• Fixing missing reference sequence bug in annot2baits

BaitsTools version 1.7.2

• Fixed a glitch in selectsnps which caused a crash if previous baits specify a chr not found in current VCF

BaitsTools version 1.7.1

Fixed bug that caused crash if no suitable SNPs were found