Fix assumptions about writability of working directory

cancerit · Apr 23, 2019 · 472d20e · 472d20e
1 parent 1c9d077
commit 472d20e
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Showing 4 changed files with 7 additions and 3 deletions.
diff --git a/CHANGES.md b/CHANGES.md
@@ -1,5 +1,9 @@
 # CHANGES
 
+## 3.1.4
+
+* Update VAGrENT to v3.3.4 specifically to fix https://github.com/cancerit/VAGrENT/issues/33
+
 ## 3.1.3
 
 * Update base image to dockstore-cgpmap:3.1.4

diff --git a/Dockerfile b/Dockerfile
@@ -33,7 +33,7 @@ MAINTAINER  cgphelp@sanger.ac.uk
 
 LABEL vendor="CASM/Cancer IT, Wellcome Sanger Institute"
 LABEL uk.ac.sanger.cgp.description="CGP WXS pipeline for dockstore.org"
-LABEL uk.ac.sanger.cgp.version="3.1.3"
+LABEL uk.ac.sanger.cgp.version="3.1.4"
 
 RUN apt-get -yq update
 RUN apt-get install -yq --no-install-recommends \

diff --git a/build/opt-build.sh b/build/opt-build.sh
@@ -25,7 +25,7 @@ VER_CGPCAVEWRAP="1.13.13"
 VER_CAVEMAN="1.13.15"
 
 # VAGrENT
-VER_VAGRENT="v3.3.3"
+VER_VAGRENT="v3.3.4"
 
 if [ "$#" -lt "1" ] ; then
   echo "Please provide an installation path such as /opt/ICGC"

diff --git a/cwls/cgpwxs.cwl b/cwls/cgpwxs.cwl
@@ -24,7 +24,7 @@ doc: |
 
 requirements:
   - class: DockerRequirement
-    dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:3.1.3"
+    dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:3.1.4"
 
 hints:
   - class: ResourceRequirement