From 74f4a84056bcc39a76e5cfe9413d3a5d7df78e70 Mon Sep 17 00:00:00 2001
From: Keiran Raine <kr2@sanger.ac.uk>
Date: Thu, 9 Mar 2017 15:09:20 +0000
Subject: [PATCH] UPgrade cgpPindel

---
 CHANGES.md         | 3 +++
 Dockerfile         | 2 +-
 Dockstore.cwl      | 2 +-
 build/opt-build.sh | 2 +-
 4 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/CHANGES.md b/CHANGES.md
index 5323409..9b1908c 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -1,3 +1,6 @@
+### 2.0.4
+Large reduction in temp space and I/O for cgpPindel.  See [cgpPindel-v2.2.0](https://github.com/cancerit/cgpPindel/releases/tag/v2.2.0)
+
 ### 2.0.3
 * Fixed cgpPindel
 
diff --git a/Dockerfile b/Dockerfile
index e347cea..a60c876 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -3,7 +3,7 @@ FROM  quay.io/wtsicgp/dockstore-cgpmap:2.0.1
 MAINTAINER  keiranmraine@gmail.com
 
 LABEL uk.ac.sanger.cgp="Cancer Genome Project, Wellcome Trust Sanger Institute" \
-      version="2.0.3" \
+      version="2.0.4" \
       description="The CGP WXS pipeline for dockstore.org"
 
 USER  root
diff --git a/Dockstore.cwl b/Dockstore.cwl
index 2caf842..020c41d 100644
--- a/Dockstore.cwl
+++ b/Dockstore.cwl
@@ -19,7 +19,7 @@ dct:creator:
 
 requirements:
   - class: DockerRequirement
-    dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:2.0.3"
+    dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:2.0.4"
 
 hints:
   - class: ResourceRequirement
diff --git a/build/opt-build.sh b/build/opt-build.sh
index 244739c..647fa9e 100644
--- a/build/opt-build.sh
+++ b/build/opt-build.sh
@@ -13,7 +13,7 @@ VER_CGPVCF="v2.2.0"
 VER_VCFTOOLS="0.1.14"
 
 # cgpPindel
-VER_CGPPINDEL="v2.1.2"
+VER_CGPPINDEL="v2.2.0"
 
 # cgpCaVEManPostProcessing
 VER_CGPCAVEPOSTPROC="1.6.8"