From 48446de6220e78092b7cdd9565f7f2dec41ec75d Mon Sep 17 00:00:00 2001 From: Keiran Raine Date: Fri, 28 Jul 2017 14:47:46 +0100 Subject: [PATCH 1/3] VAGrENT version --- build/opt-build.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/build/opt-build.sh b/build/opt-build.sh index 6f6aec3..3c2f61c 100644 --- a/build/opt-build.sh +++ b/build/opt-build.sh @@ -26,7 +26,7 @@ VER_CGPCAVEWRAP="1.11.0" VER_CAVEMAN="1.11.3" # VAGrENT -VER_VAGRENT="v3.2.2" +VER_VAGRENT="v3.2.3" if [ "$#" -lt "1" ] ; then echo "Please provide an installation path such as /opt/ICGC" From 70b4b4b83218ee20987f6cfaa60fb53b202d07bc Mon Sep 17 00:00:00 2001 From: Keiran Raine Date: Tue, 1 Aug 2017 12:52:34 +0100 Subject: [PATCH 2/3] Bump caveman versions --- build/opt-build.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/build/opt-build.sh b/build/opt-build.sh index 3c2f61c..5af72d1 100644 --- a/build/opt-build.sh +++ b/build/opt-build.sh @@ -22,8 +22,8 @@ VER_CGPCAVEPOSTPROC="1.6.9" VER_BEDTOOLS="2.21.0" # cgpCaVEManWrapper -VER_CGPCAVEWRAP="1.11.0" -VER_CAVEMAN="1.11.3" +VER_CGPCAVEWRAP="1.12.0" +VER_CAVEMAN="1.12.0" # VAGrENT VER_VAGRENT="v3.2.3" From b2cf646ea2d0b77812eed8d3363ebbde798f22ea Mon Sep 17 00:00:00 2001 From: Keiran Raine Date: Tue, 1 Aug 2017 12:53:45 +0100 Subject: [PATCH 3/3] Update image version --- Dockerfile | 2 +- Dockstore.cwl | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index 48ca12d..15e511e 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ FROM quay.io/wtsicgp/dockstore-cgpmap:2.0.3 MAINTAINER keiranmraine@gmail.com LABEL uk.ac.sanger.cgp="Cancer Genome Project, Wellcome Trust Sanger Institute" \ - version="2.1.0" \ + version="2.1.1" \ description="The CGP WXS pipeline for dockstore.org" USER root diff --git a/Dockstore.cwl b/Dockstore.cwl index af1b931..ff1147f 100644 --- a/Dockstore.cwl +++ b/Dockstore.cwl @@ -19,7 +19,7 @@ dct:creator: requirements: - class: DockerRequirement - dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:2.1.0" + dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:2.1.1" hints: - class: ResourceRequirement