diff --git a/CHANGES.md b/CHANGES.md index 12929a8..649099a 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,5 +1,9 @@ # CHANGES +## 3.1.5 + +* Update cgpCaVEManWrapper to allow parallel flagging in cgpwgs layer + ## 3.1.4 * Update VAGrENT to v3.3.4 specifically to fix https://github.com/cancerit/VAGrENT/issues/33 diff --git a/Dockerfile b/Dockerfile index 3d94a90..6267936 100644 --- a/Dockerfile +++ b/Dockerfile @@ -33,7 +33,7 @@ MAINTAINER cgphelp@sanger.ac.uk LABEL vendor="CASM/Cancer IT, Wellcome Sanger Institute" LABEL uk.ac.sanger.cgp.description="CGP WXS pipeline for dockstore.org" -LABEL uk.ac.sanger.cgp.version="3.1.4" +LABEL uk.ac.sanger.cgp.version="3.1.5" RUN apt-get -yq update RUN apt-get install -yq --no-install-recommends \ diff --git a/build/opt-build.sh b/build/opt-build.sh index ca8a506..c5c9d70 100644 --- a/build/opt-build.sh +++ b/build/opt-build.sh @@ -21,7 +21,7 @@ VER_CGPCAVEPOSTPROC="1.8.7" VER_BEDTOOLS="2.27.1" # cgpCaVEManWrapper -VER_CGPCAVEWRAP="1.13.13" +VER_CGPCAVEWRAP="1.13.14" VER_CAVEMAN="1.13.15" # VAGrENT diff --git a/cwls/cgpwxs.cwl b/cwls/cgpwxs.cwl index ec85975..4e2c694 100644 --- a/cwls/cgpwxs.cwl +++ b/cwls/cgpwxs.cwl @@ -24,7 +24,7 @@ doc: | requirements: - class: DockerRequirement - dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:3.1.4" + dockerPull: "quay.io/wtsicgp/dockstore-cgpwxs:3.1.5" hints: - class: ResourceRequirement