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bulk_RNA_data.txt
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bulk_RNA_data.txt
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pCR patient timepoint CTNNB1 RPS6 PTEN MAPK1 MKI67 B2M AKT1 STAT3 ERBB2 KRT18 CD8A CD4 CD68 CD14 GZMB CD3E CEACAM8 C10orf54 PDCD1 CD274 INDO CD44 NCAM1 PTPRC CD19 TMEM173 LAG3 ITGAX ICOS CD27 CD163 TNFSF4 BCL2 CD276 VTCN1 TNFRSF9 FOXP3
X6_Baseline 0 6 B 10.6338577316446 16.3989232333341 10.0803028302352 8.69466048474899 7.61325697450813 12.4839610205163 7.19702654456414 7.88294032299115 13.5221175684693 13.324838290011 8.89035249531233 12.0968509378108 9.81964144828285 8.6191309944265 8.4510139173695 7.87898745642602 6.63208148196394 9.32212365165705 8.07194123411621 7.25625883637044 8.61014061095794 12.3779471773735 6.39611694475662 8.05645953196148 8.05372267634464 12.8388434642464 8.85423670032795 8.7451426691808 7.80143297264326 8.37899553076914 10.9010169549481 7.59880458735924 9.91099697754641 7.84200728584073 12.4746454463482 7.21179093372868 6.48486003733525
X12_Baseline 1 12 B 9.66093810276145 16.6326721001209 9.93955553552921 9.27480542324288 7.99524347902833 13.0809619832879 8.26381869529014 8.71493984310034 12.1338560081245 12.6822666156855 12.0812036879297 13.0334616416614 11.395247526535 10.2666580837274 12.3720460103847 8.53809010906461 6.61615101498914 10.7415898965496 10.411226379292 9.18762790295341 12.011454864002 13.3783569473594 6.55984673564492 9.5958957321585 12.584579239246 12.0043080183691 10.6650792569645 9.33828644922667 9.60192675141593 11.0139401935808 12.5369206945418 8.46898517909928 9.95007938297934 7.31911802909365 10.9738669960085 8.971971616302 6.56393319067434
X20_Baseline 0 20 B 10.7603952211495 16.207942817887 10.8502529725717 9.40637115972377 7.28680745879367 11.9125499055097 8.3108816053071 8.84507037972214 13.1902833998959 13.2039339159178 8.22046365764801 12.1435509512511 10.6495420914026 10.0385698521884 7.71438339294816 7.18464635889719 6.49952780932711 9.04533090250322 7.76718987804857 7.44077074059996 8.96888368438283 11.9926158754316 6.41543392453704 8.03050897513886 7.26995853854146 12.1939606752684 8.2539392957493 8.40439128630804 7.54217701187738 7.56375519806611 12.4729439361807 8.87018727249978 8.2560239134706 8.21721219575184 13.385906100617 7.95306841384537 6.51268128455144
X30_Baseline 1 30 B 10.3547981796716 16.2617588181779 9.92517106229086 9.42839700842841 8.50573085561274 12.441533797508 7.90902113000153 8.65138002101091 13.7876996311035 12.4943470660155 10.6542024943415 14.6169997896276 11.3462076349462 10.5487118507809 11.6833847379084 8.8815802081832 6.37388889213142 10.102733618075 9.98494012756095 8.46769622560019 12.0118722787874 13.006359656121 6.58916780154789 9.12374664354483 10.7089777362867 11.2609498126531 10.1961630357852 8.76163837886353 8.79444399578525 9.95288663491453 13.2829092000933 8.21726717411681 9.62516450433538 8.25798300433773 10.0891871877626 8.24109954618746 6.56068649044318
X31_Baseline 1 31 B 10.3507865493095 17.1071418240466 10.2649230761426 8.41089673060051 6.65054922578766 12.7920120578765 6.98107187545936 7.92300976843537 11.896200175001 12.0396167813257 10.0866528997805 12.2537462877298 9.41791162432423 8.93689084618891 8.80580864533432 7.86918565695945 6.59659841710791 9.93551112140956 9.23811245802906 7.41921572818148 8.69703079804865 12.8744783265114 6.43702249770247 8.63779383563266 10.5874201691534 12.9498047833202 8.54112584797991 8.27434320032478 8.09877177552413 9.2551746029827 11.265512147886 7.04688169204433 10.3687528134973 7.09981663587844 13.9314549392504 7.47557010036187 6.66798699459851
X39_Baseline 0 39 B 9.90150386028023 16.8784507200689 10.3661864130413 8.80595046486709 7.27270016379209 13.2250819324521 7.36366216339237 8.18584893458434 13.2462352788601 12.8445470212178 11.1606204536129 13.0387947107633 10.8014081384566 9.02854945502039 11.3725499347691 7.75803483737432 6.65984554922013 9.97205351372462 9.74788827776221 8.03299470919382 11.4582766212093 13.9196503449609 6.51955670844124 8.91952897250166 9.79182792478834 12.3318048434609 9.1463393662229 8.83684787499875 9.31659310004682 9.76970653204837 12.8658787075177 8.60138343466446 9.59335192286535 7.54265979353408 12.5776849415284 8.42678152551159 6.51005319305905
X41_Baseline 0 41 B 10.538926246151 16.0609530334451 10.3854592252829 9.23024371608993 8.17090755366952 12.3053411294304 7.82336213599122 8.21338059713872 14.6536265214807 12.8140609699626 10.8397973643103 12.7803430581627 11.116839761871 9.81037737490244 9.3858243066518 7.78858329259415 6.44622745613264 10.0318330906271 9.63836143656528 7.32682137657956 9.41565284278267 12.8770443635775 6.46108127385174 8.91994878111625 10.4084342315387 12.9244762148381 9.18602251301041 9.07116203568331 8.32241324852985 9.43881765568676 12.9007449276961 8.34422084366475 8.8959091234168 7.81588581992692 9.76668708978429 8.01716298125579 6.5029964832251
X58_Baseline 0 58 B 10.821924694915 16.3077640343674 9.83935216775273 8.77484148446769 7.68941173693546 12.0327073901286 8.80926192124012 8.25893194769301 13.2282360898004 13.0368160078629 9.72922506301728 12.9964689889316 10.2429124138434 9.11187281889685 9.82118269580161 7.93405427321427 6.47565406257426 9.87409268524396 8.92360253957189 7.51873324279036 9.58226519833386 11.9129289818161 6.38788502081277 8.56865346671055 10.4642454802613 11.8866530003969 8.46011850946888 8.60884933993484 8.16211957037751 9.18949880602837 11.3782923411636 8.31853493267507 9.58844571690922 7.78142559415102 13.9704260627795 7.88508174944039 6.9323851443363
X65_Baseline 1 65 B 10.6953120205382 16.9093999197752 10.2433382158347 8.89895265884564 6.80571379108667 12.9987270685078 7.17927989439326 8.21402204776044 13.0953492459374 12.4519874307441 10.3534535610145 12.2286226057256 10.0759804004293 9.28118556611256 9.76627937968406 8.23262683580852 6.95630823191647 10.2790324850998 9.63427526718152 7.34732266246119 9.57235798771291 13.0374478423069 6.43376599387464 9.32105125200858 13.4776461433719 12.7445621685642 8.26229293850919 8.41027530221985 8.7126847671313 10.4549586344497 11.5367081658786 7.42905284049497 9.75070018154191 7.32717902693947 13.1354248818416 8.15854060617801 7.07259623827223
X69_Baseline 1 69 B 10.0909674640294 16.3015768651727 9.61334008102656 8.7823869109383 7.85267469055171 12.4943715267124 8.03062016955859 8.14135952965776 14.1106056991567 13.8192499762891 10.4201997837051 12.1609338482515 9.99636196189344 8.51682067074474 9.16032702553818 7.71637866122851 6.53028521268795 9.21096514759882 9.36564343635838 7.44483827692765 10.3896941656076 11.580188924657 6.40655285408893 8.7703415727417 9.96448485991116 11.6862837801581 8.82968162614476 8.66069110596164 8.65171455060654 9.46057474771278 11.2176291313972 8.21967228043716 8.80577748932879 7.84095652001977 10.3764618927864 7.65221970483261 6.4659724532351
X70_Baseline 1 70 B 11.6814263699011 17.2928537113311 10.2394188497702 8.81383674327201 6.77843976943575 13.2235344755345 7.25037291601052 7.94494009675167 13.2607878774163 12.0822035130289 11.5831792476681 12.654716680399 10.7598283389663 9.11333907924429 11.6230724300685 7.8656080506986 6.26607850515088 9.94605801093242 10.0014437050558 7.94512506723824 11.5148066399173 13.8366851658233 6.32776138662755 9.0164089302278 10.8787709021006 12.2630579398035 9.93703626421048 9.42851719315953 9.42458165421388 10.0904595716782 11.8599497771053 8.19968894637488 9.66545244458057 7.57987802604612 11.122731323884 8.43427236493612 6.64768023544735
X73_Baseline 0 73 B 9.35752630172446 16.2659390480393 10.3401678140093 8.55056374097229 7.69190536393905 13.4106325547558 7.44172595009833 8.05498794636135 11.8831672273423 13.3810910124476 11.2920977065787 12.6082758602884 10.5960523323249 10.130103489384 12.1043121361882 7.89812787534328 6.47844144102889 8.90842107676048 10.7024150809433 8.55426281562601 10.3433941198196 12.2811200772263 6.5012519335814 9.29338532807778 10.7169871147314 12.2186564796437 11.3190638346616 8.84418130971897 10.4842457363073 10.6336508586488 13.4659576661022 9.12123823124678 10.4827088664026 7.44293339962666 10.4729056766115 8.32222797823944 6.61086860123507
X75_Baseline 1 75 B 10.6264303123772 16.1342479219191 10.4639550126577 9.68133291285001 7.0121857451658 12.5758085231815 7.09138118232733 8.2426625627652 13.6992476267549 13.7025984320883 9.7175740835294 12.6740715778193 10.9731218344449 9.49248266533358 10.0201338595259 8.80692940949058 6.94056969710963 9.4507388327927 8.9988946271379 7.27528443774506 9.09340755594268 14.0546666451295 6.2723154840717 8.49461685371164 10.7778281771005 12.5457217389316 8.37071586139334 8.7964792102034 8.50373728945459 9.62569140963777 12.0996152233853 8.00093120221789 9.99578558078041 7.93427307180077 11.6093504636673 7.83995584054352 6.79239083728096
X77_Baseline 1 77 B 10.2789338513889 17.3146219240412 10.5446591697008 8.77401551831654 7.59811227040496 12.3566838675888 7.31469629939974 7.78320663332714 14.1123544978606 13.2078161378807 10.4098325741109 13.0615364644057 9.42104899412727 9.08701223306688 10.7949118649236 8.29969527991368 6.75399350864248 9.36563587860845 9.62600367319813 7.77535353420574 10.628792993416 13.2047691400339 6.51517020707058 8.74753726619285 11.1640674593512 12.6547095006605 8.67818238800842 8.22766019015956 9.64027789802502 10.1168036802986 12.1570838505893 7.93700370004715 10.2989433159056 7.29321442564672 13.3171215300018 7.9155163756613 6.98448170064286
X82_Baseline 0 82 B 10.2986679691534 16.9290255507974 9.72913165072509 9.13840067943337 6.4749465472137 12.0431533155802 8.2989907175829 7.9722086973111 13.6492933123879 12.2885816785621 9.87947529261815 12.2376006677029 10.0905038120223 8.96503248485619 9.28700888171586 7.66205844169074 6.60480014158666 9.98253342411355 8.83833714664804 7.05749724236203 9.17418837288579 12.5141485876303 6.33589666775817 8.21186293459511 8.97768450855319 11.9370306327546 8.76718174364075 8.40397461452828 8.1141890107559 8.80132614546269 11.5767942691741 6.9238572737421 9.00430573884677 7.58260534728391 13.7102978735757 7.16217121533739 6.37373669012842
X85_Baseline 0 85 B 10.8371102496936 16.0534409389756 10.6073572641979 8.78265541364713 7.73573765103195 11.8959847526503 7.90276682521213 8.28694160981606 13.6631824989991 13.1038100244097 7.75134219620514 11.3649818268218 9.78533630903108 9.07815649356403 7.22309738374279 7.36404353835201 6.56492755163109 8.73180270304355 7.66649198812706 6.98517846556113 7.95801377343036 12.7186057414901 6.28263622617606 7.78726556688513 7.67997354941877 11.5517578458796 8.34247218791484 8.29383585154885 7.39538043606871 7.62612955644722 11.1098442828871 8.41350102221229 8.34103052246975 7.7503432877886 11.1823562705037 7.09755762938898 6.35174683678901
X101_Baseline 1 101 B 10.3612571453456 15.8541537557089 10.050038394701 9.8776911178043 7.40113144623645 13.3067338829838 7.95855204515636 8.57656452158007 12.8116024217113 12.3839140612552 11.651850531724 13.1618775984335 11.6092623313387 10.8728697363888 12.275953049019 8.6392249545727 6.59956430696456 10.7382578408699 10.4014711901668 8.74131826548597 12.5195722805846 12.9976945296519 6.25829299709351 9.32341728931156 10.3955681730388 13.240589197076 10.6267364610152 9.12694217465319 9.96856995891434 10.6558916530407 13.5986468820362 8.95247327188072 9.32656375793487 7.4337014664866 11.6625268517006 8.84651197752431 6.32387494878544
X105_Baseline 0 105 B 10.6798208110815 16.9958057250749 9.70667211295966 8.98311208123291 6.88772785682545 13.2229766539895 7.85391878554589 8.1781403440947 12.8709107886927 12.5276453516011 11.4174780524613 13.5913531978724 11.1151854537508 9.36676303018902 9.57384482304138 7.98391294978811 6.57114781331212 9.46116717740636 9.33212642629032 7.68153932540874 10.303538461307 11.7701755184172 6.41076607497209 8.93370033240352 10.3163329099033 12.2468575395001 9.46987785309954 8.75916875384138 8.60800827002389 10.2548737486877 12.2527454127202 7.65968999826349 10.0330732580398 7.66300530886079 10.1843040295011 8.28188953621562 6.56166241362282
X110_Baseline 0 110 B 9.77245320733845 16.4086023001706 10.7525358667798 8.72849915334556 7.96569880775133 12.4909632962467 8.4031426223906 8.83053845767549 12.4582751562282 12.7213897961306 9.64225202914254 12.0874298289576 9.97190186387459 9.75999136832011 11.0965223289953 7.46924551089326 6.3612996359513 9.2406522394092 9.59100451884736 7.85471773155872 10.4057478073054 13.2148235749956 6.47655667743073 8.41576310207856 9.22042416793015 11.4542490447903 8.94820503646621 7.98661198788844 8.48961407380207 8.37130791501943 12.7491779074947 7.58695804322046 8.53685092507599 7.81138155405725 13.3735583974134 7.45719139012052 6.56879781382577
X116_Baseline 1 116 B 10.8531979240228 16.1347173281158 10.0553700890949 10.1027209125293 7.7107259532217 12.6251241967619 7.92084797356028 8.44220367059886 13.5808376002518 12.755201782969 9.82945084160325 10.942777065122 10.2895187891024 10.125384236075 10.7218003200585 7.48293515204247 6.57606689047687 9.74783998536394 9.30841992323893 8.13891816755291 10.4208637118611 13.8902640271885 6.47401446444932 8.53035637596306 9.68161198581854 12.4319633592532 9.0580764255162 8.30741704067913 8.17979636803337 9.64585146524372 12.8530069475121 8.24558265306406 8.96212931560015 7.80556316555097 13.2953018333389 7.89576024705868 6.4146318079776
X122_Baseline 1 122 B 10.7276009162872 17.0215731086516 9.88284262009981 9.22619730319859 7.68470188109478 12.9328345751174 7.86655502013108 8.35546702399458 13.2003120099583 12.9795881676023 10.2828653923511 13.469618416058 11.5611726596309 10.4036676973198 9.48132779599289 7.90784826277172 6.48280535262896 9.97357268225869 9.84336822374977 7.74117671926351 9.61113586282691 12.6432503631069 6.65878216394051 9.15184702629227 10.452832841436 12.4256973878325 9.63687896583794 9.39124062963301 8.98376407206602 10.4472958125057 13.261274724867 8.38000018333832 9.65591281340273 7.94790410226572 13.6073160454556 8.50599244219859 6.69504227433815
X125_Baseline 0 125 B 9.39689897095064 17.2653736733593 10.1804935395858 9.07428184712247 6.78211377802222 13.9836623140245 6.70880548295931 7.78168246163528 11.16404297762 10.5030023884387 13.2952638448335 14.0226395320418 10.3626106233241 9.13845138587071 11.5890430201287 9.69429152493038 6.80054068752305 10.6777511914046 12.383401140206 8.41447796346153 11.6097634637889 14.2444959450004 6.67288921647621 10.5197660370559 15.5790336228852 13.0067462520482 10.6444601054052 9.06844061548382 11.624443085111 13.2452092788035 11.6985242134036 7.89858458238198 10.5751006651443 7.20298472967526 8.89556009105398 9.0306307806588 6.9734345721205
X127_Baseline 0 127 B 11.3349935537821 17.2256229255905 10.2939587580808 8.51710252640805 6.8019459479395 11.6125719043485 7.66950242478808 8.78589369934152 12.0071565405967 12.9819431266102 9.76760824343387 13.1209904021165 10.5161364674735 9.07540709948955 7.80493950333436 8.27903470031808 6.41243868998301 9.77391687299585 8.19811007996726 6.74841238809617 8.67713060056719 11.9822795942242 6.54348080589552 8.24261887344213 9.64214654218202 11.8230311483025 7.79112853349152 8.44103966674956 7.75246742229582 9.23655782856461 10.8552375807864 7.24915034500652 9.9209254344963 7.17876459133998 10.8473086202474 7.2724301068467 6.88416963051093
X130_Baseline 1 130 B 10.3829289592057 16.9998693421624 10.6666909902925 9.04106429531774 7.33261242785779 12.6382855121466 7.85896647288631 8.23215150759023 14.6942884965363 11.7339852363385 9.98792687852633 13.5984592499735 10.3011454605902 9.84581949791455 10.8344414194715 7.54695810119846 6.21382284208109 9.96604437335529 9.6301458396186 7.20258364447846 9.5601389469782 13.8782287341243 6.46894108479398 8.92800784058434 9.91829902104569 12.9352186730227 7.82152756283787 8.52593038101525 8.81321749559956 9.38953449444275 12.8277442002588 8.55657010887492 9.50237445704096 8.07418644638332 10.2507710931171 8.02008174169621 6.44334942629977
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