Readme.md

Source code to reproduce the analysis from the paper:

Seoane JA, Kirkland JG, Caswell-Jin JL, Crabtree GR and Curtis C. Chromatin regulators mediate anthracycline sensitivity in breast cancer. Nat Med 25, 1721–1727 (2019). doi: 10.1038/s41591-019-0638-5

Structure:

• Pipeline: Code for process raw data
• Figures: Code for reproduce the figures from the paper

Intermediate results can also be found in Figshare in the following URLs:

• Clinical metacohort anthra vs non anthra https://figshare.com/articles/Clinical_Metacohort_anthra_vs_non_anthra_/9717473
• Clinical metacohort anthra vs taxane https://figshare.com/articles/Clinical_Metacohort_anthra_vs_taxane_/9956591
• Clinical cohort anthra vs CMF https://figshare.com/articles/Clinical_Metacohort_anthra_vs_CMF_/9956585