Bump nltk from 3.4.5 to 3.9 #1566
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| name: pytest | |
| on: | |
| push: | |
| pull_request: | |
| types: [opened, edited, review_requested, synchronize, reopened] | |
| jobs: | |
| conda-build: | |
| timeout-minutes: 70 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: capreolus | |
| environment-file: environment.yml | |
| auto-activate-base: false | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| conda activate capreolus | |
| # delete conda cache to avoid "No space left on device" Exception | |
| conda list | |
| conda clean --all | |
| conda install pytorch=1.8.1 torchvision cpuonly -c pytorch | |
| conda list | |
| # hack to force h5py version. 3.0 is not compatible with TF. | |
| pip install h5py==2.10.0 | |
| # checks every test except those marked download | |
| pytest -vvv | |
| pip-build: | |
| timeout-minutes: 50 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Java 11 | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: '11' | |
| - name: black | |
| uses: lgeiger/black-action@master | |
| with: | |
| args: ". --check --config capreolus/pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip==21.1.3 | |
| # cython should be installed seperately due to a pip bug. For some reason, it tries to build pyjnius before building cython | |
| pip install cython | |
| pip install -r requirements.txt | |
| pip install torch==1.8.1+cu101 torchvision==0.9.1+cu101 -f https://download.pytorch.org/whl/torch_stable.html | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| export PYTHONPATH=${PYTHONPATH}:/home/runner/work/capreolus/capreolus/ | |
| # checks every test except those marked download | |
| python -m pytest -vvv | |
| # download: | |
| # timeout-minutes: 50 | |
| # if: github.ref == 'refs/heads/master' | |
| # runs-on: ubuntu-latest | |
| # strategy: | |
| # max-parallel: 4 | |
| # matrix: | |
| # python-version: [3.7] | |
| # steps: | |
| # - uses: actions/checkout@v1 | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v1 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Set up Java 11 | |
| # uses: actions/setup-java@v1 | |
| # with: | |
| # java-version: '11' | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # # cython should be installed seperately due to a pip bug. For some reason, it tries to build pyjnius before building cython | |
| # pip install cython | |
| # pip install -r requirements.txt | |
| # pip install torch==1.6.0+cu101 torchvision==0.7.0+cu101 -f https://download.pytorch.org/whl/torch_stable.html | |
| # - name: Test downloads with pytest | |
| # run: | | |
| # pip install pytest | |
| # export PYTHONPATH=${PYTHONPATH}:/home/runner/work/capreolus/capreolus/ | |
| # # checks only tests marked download | |
| # python -m pytest -vvv -m download |