README.Rmd

---
output: github_document
---

Landing page for the *Cancer Data Science Laboratory (CDS)* at the
University of Trieste, Italy.

[![](https://img.shields.io/badge/CDS%20Lab%20Github-caravagnalab-seagreen.svg)](https://github.com/caravagnalab)
[![](https://img.shields.io/badge/CDS%20Lab%20webpage-https://www.caravagnalab.org/-red.svg)](https://www.caravagnalab.org/)


# R packages

| Tool | pkgdown | R CMD check |
|------|---------|-------------|
[<img src="https://caravagnalab.github.io/BMix/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/BMix) | [![BMix](https://github.com/caravagnalab/BMix/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/BMix/actions/workflows/pkgdown.yaml) | [![BMix](https://github.com/caravagnalab/BMix/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/BMix/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/CNAqc/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/CNAqc) | [![CNAqc](https://github.com/caravagnalab/CNAqc/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/CNAqc/actions/workflows/pkgdown.yaml) | [![CNAqc](https://github.com/caravagnalab/CNAqc/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/CNAqc/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/ctree/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/ctree) | [![ctree](https://github.com/caravagnalab/ctree/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/ctree/actions/workflows/pkgdown.yaml) | [![ctree](https://github.com/caravagnalab/ctree/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/ctree/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/mobster/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/mobster) | [![mobster](https://github.com/caravagnalab/mobster/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/mobster/actions/workflows/pkgdown.yaml) | [![mobster](https://github.com/caravagnalab/mobster/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/mobster/actions/workflows/R-CMD-check.yaml)
mtree | !mtree | !mtree
[<img src="https://caravagnalab.github.io/rcongas/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/rcongas) | [!rcongas](https://github.com/caravagnalab/rcongas/actions/workflows/pkgdown.yaml) | [!rcongas](https://github.com/caravagnalab/rcongas/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/revolver/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/revolver) | [![revolver](https://github.com/caravagnalab/revolver/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/revolver/actions/workflows/pkgdown.yaml) | [![revolver](https://github.com/caravagnalab/revolver/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/revolver/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/TINC/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/TINC) | [![TINC](https://github.com/caravagnalab/TINC/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/TINC/actions/workflows/pkgdown.yaml) | [![TINC](https://github.com/caravagnalab/TINC/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/TINC/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/VIBER/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/VIBER) | [![VIBER](https://github.com/caravagnalab/VIBER/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/VIBER/actions/workflows/pkgdown.yaml) | [![VIBER](https://github.com/caravagnalab/VIBER/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/VIBER/actions/workflows/R-CMD-check.yaml)
[basilica](https://caravagnalab.github.io/basilica) | [![basilica](https://github.com/caravagnalab/basilica/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/basilica/actions/workflows/pkgdown.yaml) | [![basilica](https://github.com/caravagnalab/basilica/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/basilica/actions/workflows/R-CMD-check.yaml)
[lineaGT](https://caravagnalab.github.io/lineaGT) | [![lineaGT](https://github.com/caravagnalab/lineaGT/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/lineaGT/actions/workflows/pkgdown.yaml) | [![lineaGT](https://github.com/caravagnalab/lineaGT/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/lineaGT/actions/workflows/R-CMD-check.yaml)
[<img src="https://caravagnalab.github.io/easypar/reference/figures/logo.png" width=49px></img>](https://caravagnalab.github.io/easypar) | [![easypar](https://github.com/caravagnalab/easypar/workflows/pkgdown/badge.svg)](https://github.com/caravagnalab/easypar/actions/workflows/pkgdown.yaml) | [![easypar](https://github.com/caravagnalab/easypar/workflows/R-CMD-check/badge.svg)](https://github.com/caravagnalab/easypar/actions/workflows/R-CMD-check.yaml)
pio | !pio | !pio


# Python packages

| Tool | pkgdown | R CMD check |
|------|---------|-------------|
congas | [!congas](https://github.com/caravagnalab/congas/actions/workflows/pkgdown.yaml) | [!congas](https://github.com/caravagnalab/congas/actions/workflows/R-CMD-check.yaml)
pyBasilica | !pyBasilica | !pyBasilica
pyLineaGT | [!pyLineaGT](https://github.com/caravagnalab/pyLineaGT/actions/workflows/pkgdown.yaml) | [!pyLineaGT](https://github.com/caravagnalab/pyLineaGT/actions/workflows/R-CMD-check.yaml)