update s posterior with multiple karyotypes and subclones #24
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
| name: pkgdown | ||
| jobs: | ||
| pkgdown: | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
| - name: Restore R package cache | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
| - name: Install dependencies | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE) | ||
| install.packages("pkgdown", type = "binary") | ||
| shell: Rscript {0} | ||
| - name: Install package | ||
| run: R CMD INSTALL . | ||
| - name: Deploy package | ||
| run: | | ||
| git config --local user.email "actions@github.com" | ||
| git config --local user.name "GitHub Actions" | ||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
| - uses: r-lib/actions/setup-r@v1 | ||
| with: | ||
| use-public-rspm: true | ||
| - uses: r-lib/actions/setup-r-dependencies@v1 | ||
| with: | ||
| extra-packages: pkgdown | ||
| needs: website | ||
| - name: Deploy package | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | ||
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' | ||
