The folders are organized based on which kinds of data are being compared. Each folder contains the scripts for those kinds of data.
MAGs-samples contains the scripts used to compile and plot the data comparing MAG expression across different samples.
genes-samples is for calculating the community-level expression and abundance of genes across samples.
Finally, MCS-MAGs is used to calculate the module completion score of each MAG.
All scripts are written in Python 3.6.2.
matplotlib
numpy
pandas
ply
requests
seaborn
Please contact Rika Anderson with any questions or bug fixes.