Adding an iterative snakefile.

No cluster shenanigans in this one, just straight-up iteration, maybe a useful intermediate step.
carpentries-incubator · Dec 20, 2023 · 3cb2dfb · 3cb2dfb
1 parent 2564dc3
commit 3cb2dfb
Showing 1 changed file with 13 additions and 0 deletions.
diff --git a/episodes/files/Snakefile_iterative b/episodes/files/Snakefile_iterative
@@ -0,0 +1,13 @@
+#
+# Iterative example.
+#
+NAMES=['one','two','three']
+#
+rule done:
+  input: expand('{name}.out',name=NAMES)
+  output: 'done.out'
+  shell: 'echo "Done!" > done.out'
+rule iterate:
+  input: 
+  output: '{sample}.out' 
+  shell: 'echo {output} > {output}'