From 4d58e1c516735d35e66b2b53c8ea51a74eaf8488 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 17 Sep 2024 00:57:53 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 574287ef2393d8bdad3224045028125a0771b149
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-06-20 20:10:43 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : ba7a81f0d9b367f2ad53ce3002abaafb735ec16a
Branch  : main
Author  : Andrew Reid <andrew.reid@nist.gov>
Time    : 2024-06-20 20:08:52 +0000
Message : Merge pull request #24 from carpentries-incubator/ocaisa-patch-3

Delete renv directory
---
 01-introduction.html                        |  6 +++---
 02-snakemake_on_the_cluster.html            |  2 +-
 03-placeholders.html                        |  2 +-
 04-snakemake_and_mpi.html                   | 10 +++++-----
 05-chaining_rules.html                      |  4 ++--
 06-expansion.html                           |  2 +-
 404.html                                    |  4 ++--
 CODE_OF_CONDUCT.html                        |  2 +-
 LICENSE.html                                |  2 +-
 aio.html                                    | 18 +++++++++---------
 images.html                                 |  4 ++--
 index.html                                  |  4 ++--
 instructor-notes.html                       |  4 ++--
 instructor/01-introduction.html             |  6 +++---
 instructor/02-snakemake_on_the_cluster.html |  2 +-
 instructor/03-placeholders.html             |  2 +-
 instructor/04-snakemake_and_mpi.html        | 10 +++++-----
 instructor/05-chaining_rules.html           |  4 ++--
 instructor/06-expansion.html                |  2 +-
 instructor/404.html                         |  4 ++--
 instructor/CODE_OF_CONDUCT.html             |  2 +-
 instructor/LICENSE.html                     |  2 +-
 instructor/aio.html                         | 18 +++++++++---------
 instructor/images.html                      |  4 ++--
 instructor/index.html                       |  4 ++--
 instructor/instructor-notes.html            |  4 ++--
 instructor/key-points.html                  |  4 ++--
 instructor/profiles.html                    |  4 ++--
 instructor/reference.html                   |  2 +-
 key-points.html                             |  4 ++--
 pkgdown.yml                                 |  2 +-
 profiles.html                               |  4 ++--
 reference.html                              |  2 +-
 33 files changed, 75 insertions(+), 75 deletions(-)

diff --git a/01-introduction.html b/01-introduction.html
index 3466190..7461079 100644
--- a/01-introduction.html
+++ b/01-introduction.html
@@ -531,7 +531,7 @@ <h3 class="callout-title">Running Snakemake</h3>
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>You can search in the text by pressing <kbd>/</kbd>, and quit back to
 the shell with <kbd>q</kbd>.</p>
@@ -544,7 +544,7 @@ <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol start="2" style="list-style-type: decimal"><li>Prints the shell commands that are being run to the terminal</li>
 </ol><p>This is such a useful thing we don’t know why it isn’t the default!
@@ -634,7 +634,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/01-introduction.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/02-snakemake_on_the_cluster.html b/02-snakemake_on_the_cluster.html
index 0b38979..a0b80b1 100644
--- a/02-snakemake_on_the_cluster.html
+++ b/02-snakemake_on_the_cluster.html
@@ -732,7 +732,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/02-snakemake_on_the_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/03-placeholders.html b/03-placeholders.html
index 0f0e8c7..aa5d718 100644
--- a/03-placeholders.html
+++ b/03-placeholders.html
@@ -500,7 +500,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/03-placeholders.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/04-snakemake_and_mpi.html b/04-snakemake_and_mpi.html
index 852d06a..4d7e136 100644
--- a/04-snakemake_and_mpi.html
+++ b/04-snakemake_and_mpi.html
@@ -387,7 +387,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb1">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -487,7 +487,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>Update our cluster profile to</p>
 <div class="codewrapper sourceCode" id="cb6">
@@ -768,7 +768,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -871,7 +871,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -959,7 +959,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/04-snakemake_and_mpi.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/05-chaining_rules.html b/05-chaining_rules.html
index 5ef049d..d2a0aaf 100644
--- a/05-chaining_rules.html
+++ b/05-chaining_rules.html
@@ -403,7 +403,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>We need to add the new rule to our <code>localrules</code>:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -640,7 +640,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/05-chaining_rules.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/06-expansion.html b/06-expansion.html
index 8c51fb8..2eb9ffb 100644
--- a/06-expansion.html
+++ b/06-expansion.html
@@ -663,7 +663,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/06-expansion.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-06-20",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 3c19fa8..16bff3a 100644
--- a/404.html
+++ b/404.html
@@ -376,8 +376,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 77f4962..5f84b11 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -399,7 +399,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 2c728e0..2e3f3d8 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -447,7 +447,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 390f8a4..5f21b10 100644
--- a/aio.html
+++ b/aio.html
@@ -578,7 +578,7 @@ <h3 class="callout-title">Running Snakemake</h3>
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>You can search in the text by pressing <kbd>/</kbd>, and quit back to
 the shell with <kbd>q</kbd>.</p>
@@ -591,7 +591,7 @@ <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol start="2" style="list-style-type: decimal">
 <li>Prints the shell commands that are being run to the terminal</li>
@@ -1185,7 +1185,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb1">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1287,7 +1287,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>Update our cluster profile to</p>
 <div class="codewrapper sourceCode" id="cb6">
@@ -1605,7 +1605,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1708,7 +1708,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1818,7 +1818,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>We need to add the new rule to our <code>localrules</code>:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -2335,8 +2335,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 5b3e06d..fc45d24 100644
--- a/images.html
+++ b/images.html
@@ -420,8 +420,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index eaf2a82..b774892 100644
--- a/index.html
+++ b/index.html
@@ -448,8 +448,8 @@ <h4 class="accordion-header" id="headingSolution3">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index a13d032..e2dc232 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -422,8 +422,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/01-introduction.html b/instructor/01-introduction.html
index 0fc5f6d..37a3f51 100644
--- a/instructor/01-introduction.html
+++ b/instructor/01-introduction.html
@@ -533,7 +533,7 @@ <h3 class="callout-title">Running Snakemake</h3>
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>You can search in the text by pressing <kbd>/</kbd>, and quit back to
 the shell with <kbd>q</kbd>.</p>
@@ -546,7 +546,7 @@ <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol start="2" style="list-style-type: decimal"><li>Prints the shell commands that are being run to the terminal</li>
 </ol><p>This is such a useful thing we don’t know why it isn’t the default!
@@ -636,7 +636,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/01-introduction.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/02-snakemake_on_the_cluster.html b/instructor/02-snakemake_on_the_cluster.html
index 26ebfe9..f5c6381 100644
--- a/instructor/02-snakemake_on_the_cluster.html
+++ b/instructor/02-snakemake_on_the_cluster.html
@@ -734,7 +734,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/02-snakemake_on_the_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/03-placeholders.html b/instructor/03-placeholders.html
index 0be580a..85bcd9c 100644
--- a/instructor/03-placeholders.html
+++ b/instructor/03-placeholders.html
@@ -502,7 +502,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/03-placeholders.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/04-snakemake_and_mpi.html b/instructor/04-snakemake_and_mpi.html
index 397d8ef..8c6e9d2 100644
--- a/instructor/04-snakemake_and_mpi.html
+++ b/instructor/04-snakemake_and_mpi.html
@@ -389,7 +389,7 @@ <h3 class="callout-title">Challenge</h3>
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   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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@@ -489,7 +489,7 @@ <h3 class="callout-title">Challenge</h3>
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>Update our cluster profile to</p>
 <div class="codewrapper sourceCode" id="cb6">
@@ -770,7 +770,7 @@ <h3 class="callout-title">Challenge</h3>
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   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
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@@ -873,7 +873,7 @@ <h3 class="callout-title">Challenge</h3>
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   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
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 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -961,7 +961,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/04-snakemake_and_mpi.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/05-chaining_rules.html b/instructor/05-chaining_rules.html
index 17b2d56..1ef54af 100644
--- a/instructor/05-chaining_rules.html
+++ b/instructor/05-chaining_rules.html
@@ -405,7 +405,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>We need to add the new rule to our <code>localrules</code>:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -642,7 +642,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/05-chaining_rules.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/06-expansion.html b/instructor/06-expansion.html
index 0b73864..e71337a 100644
--- a/instructor/06-expansion.html
+++ b/instructor/06-expansion.html
@@ -665,7 +665,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/06-expansion.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-06-20",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 92d6d56..96c976a 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -376,8 +376,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index e7fb240..5fd0a2e 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -401,7 +401,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2024-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 5f3736a..28e868a 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -449,7 +449,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index f39f0a3..f4e810e 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -581,7 +581,7 @@ <h3 class="callout-title">Running Snakemake</h3>
 <button class="accordion-button hint-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseHint1" aria-expanded="false" aria-controls="collapseHint1">
   <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 </button>
-<div id="collapseHint1" class="accordion-collapse collapse" data-bs-parent="#accordionHint1" aria-labelledby="headingHint1">
+<div id="collapseHint1" class="accordion-collapse collapse" aria-labelledby="headingHint1" data-bs-parent="#accordionHint1">
 <div class="accordion-body">
 <p>You can search in the text by pressing <kbd>/</kbd>, and quit back to
 the shell with <kbd>q</kbd>.</p>
@@ -594,7 +594,7 @@ <h4 class="accordion-header" id="headingHint1"> Give me a hint </h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol start="2" style="list-style-type: decimal">
 <li>Prints the shell commands that are being run to the terminal</li>
@@ -1191,7 +1191,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1293,7 +1293,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>Update our cluster profile to</p>
 <div class="codewrapper sourceCode" id="cb6">
@@ -1611,7 +1611,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
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 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1714,7 +1714,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1825,7 +1825,7 @@ <h3 class="callout-title">Challenge</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>We need to add the new rule to our <code>localrules</code>:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -2343,8 +2343,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index a0e6a44..e55b6f8 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -422,8 +422,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 6ebc3d3..ac907a3 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -513,8 +513,8 @@ <h4 class="accordion-header" id="headingSolution3">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 8d0513b..83b93c4 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -430,8 +430,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index c5bcb49..e082d1d 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -461,8 +461,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index ab5dc1e..27512a8 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -352,8 +352,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index fa611d0..20668d3 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -393,7 +393,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 9d5bc45..ea79d96 100644
--- a/key-points.html
+++ b/key-points.html
@@ -459,8 +459,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
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diff --git a/pkgdown.yml b/pkgdown.yml
index c3ef657..f843b60 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.0
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-09-10T01:10Z
+last_built: 2024-09-17T00:57Z
diff --git a/profiles.html b/profiles.html
index e910963..d635d25 100644
--- a/profiles.html
+++ b/profiles.html
@@ -352,8 +352,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-09-10",
-  "datePublished": "2024-09-10"
+  "dateModified": "2024-09-17",
+  "datePublished": "2024-09-17"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index cec586a..1fd4e9b 100644
--- a/reference.html
+++ b/reference.html
@@ -391,7 +391,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-09-10"
+  "datePublished": "2024-09-17"
 }
 
   </script><script>