fix compile errors #259
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| # This is a basic workflow to help you get started with Actions | |
| name: openms-ci | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events | |
| on: [push] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| build-win: | |
| runs-on: windows-2022 | |
| outputs: | |
| job-status: ${{ job.status }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| path: OpenMS | |
| - name: Reduce PATH | |
| run: echo "PATH=C:\hostedtoolcache\windows\Python\3.7.9\x64\Scripts;C:\hostedtoolcache\windows\Python\3.7.9\x64;C:\hostedtoolcache\windows\Ruby\2.5.8\x64\bin;C:\Program Files\Java\jdk8u265-b01\bin;C:\ProgramData\kind;C:\vcpkg;C:\cf-cli;C:\Program Files (x86)\NSIS;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0;C:\windows\System32\OpenSSH;C:\ProgramData\Chocolatey\bin;C:\Program Files\Docker;C:\Program Files\PowerShell\7;C:\Program Files\OpenSSL\bin;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin;C:\Program Files\Git\cmd;C:\Program Files\Git\mingw64\bin;C:\Program Files\Git\usr\bin;C:\Program Files (x86)\Microsoft Visual Studio\2022\\Enterprise\Common7\IDE\CommonExtensions\Microsoft\CMake\CMake\bin" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: '5.15.2' # 5.12.7 is broken https://bugreports.qt.io/browse/QTBUG-81715, > 5.15.2 is not available on official archives (https://github.com/miurahr/aqtinstall/issues/636) | |
| host: 'windows' # default: win64_msvc2017_64 | |
| target: 'desktop' | |
| install-deps: 'true' | |
| cache: 'false' | |
| aqtversion: '==3.1.*' | |
| # https://github.com/marketplace/actions/visual-studio-shell | |
| - name: Set up Visual Studio shell | |
| uses: egor-tensin/vs-shell@v2 | |
| with: | |
| arch: x64 | |
| - name: Setup build tools | |
| shell: bash | |
| run: | | |
| choco install ccache ninja cmake | |
| ## GH CLI "SHOULD BE" installed. Sometimes I had to manually install nonetheless. Super weird. | |
| # https://github.com/actions/runner-images/blob/main/images/win/scripts/Installers/Install-GitHub-CLI.ps1 | |
| echo "C:\Program Files (x86)\GitHub CLI" >> $GITHUB_PATH | |
| - name: Extract branch/PR infos | |
| shell: bash | |
| run: | | |
| cd OpenMS | |
| RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -) | |
| echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV | |
| echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV | |
| id: extract_branch | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Cache contrib | |
| id: cache-contrib-win | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/OpenMS/contrib | |
| key: ${{ runner.os }}-contrib3 | |
| - name: Load contrib build | |
| if: steps.cache-contrib-win.outputs.cache-hit != 'true' | |
| run: | | |
| cd OpenMS/contrib | |
| curl -o contribbld.tar.gz https://abibuilder.cs.uni-tuebingen.de/archive/openms/contrib/windows/x64/msvc-14.2/contrib_build.tar.gz | |
| tar -xzf contribbld.tar.gz | |
| rm contribbld.tar.gz | |
| - name: Setup ccache cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-ccache-${{ env.RUN_NAME }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-ccache-${{ env.RUN_NAME }} | |
| ${{ runner.os }}-ccache-${{ env.BASE_REF }} | |
| ${{ runner.os }}-ccache- | |
| - name: Add THIRDPARTY | |
| shell: bash | |
| run: | | |
| # initialize THIRDPARTY | |
| cd OpenMS | |
| git submodule update --init THIRDPARTY | |
| cd .. | |
| # add third-party binaries to PATH | |
| # use flat THIRDPARTY structure | |
| mkdir -p _thirdparty | |
| cp -R OpenMS/THIRDPARTY/Windows/64bit/* _thirdparty/ | |
| cp -R OpenMS/THIRDPARTY/All/* _thirdparty/ | |
| # add third-party binaries to PATH | |
| for thirdpartytool in ${{ github.workspace }}/_thirdparty/* | |
| do | |
| echo $thirdpartytool >> $GITHUB_PATH | |
| done | |
| - name: Build Windows | |
| shell: bash | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/OpenMS/bld/ | |
| ctest --output-on-failure -V -S ../OpenMS/OpenMS/tools/ci/cibuild.cmake | |
| env: | |
| #OS_PREFIX_PATH: "${{ env.Qt5_DIR }}/lib/cmake;${{ env.Qt5_DIR }}" | |
| CONTRIB_BUILD_DIRECTORY: "${{ github.workspace }}/OpenMS/contrib" | |
| CI_PROVIDER: "GitHub-Actions" | |
| CMAKE_GENERATOR: "Ninja" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}" | |
| ENABLE_STYLE_TESTING: "OFF" | |
| ENABLE_TOPP_TESTING: "ON" | |
| ENABLE_CLASS_TESTING: "ON" | |
| WITH_GUI: "ON" | |
| ADDRESS_SANITIZER: "Off" | |
| BUILD_TYPE: "Release" | |
| OPENMP: "Off" | |
| USE_STATIC_BOOST: "On" | |
| # BUILD_FLAGS: "-p:CL_MPCount=2" # For VS Generator and MSBuild | |
| BUILD_FLAGS: "-j2" # Ninja will otherwise use all cores (doesn't go well in GHA) | |
| CMAKE_CCACHE_EXE: "ccache" | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 400M | |
| - name: Test Windows | |
| shell: bash | |
| run: $LAUNCHER ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake | |
| env: | |
| LAUNCHER: "" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| CI_PROVIDER: "GitHub-Actions" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}" | |
| build-macos: | |
| runs-on: macos-latest | |
| outputs: | |
| job-status: ${{ job.status }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| path: OpenMS | |
| - name: Extract branch/PR infos | |
| shell: bash | |
| run: | | |
| cd OpenMS | |
| RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -) | |
| echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV | |
| echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV | |
| id: extract_branch | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install ccache | |
| run: | | |
| brew install ccache && brew link --overwrite ccache | |
| - name: Setup ccache cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-ccache-${{ env.RUN_NAME }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch | |
| # (probably only access to default branch "develop" is allowed). | |
| # TODO: Check if this is even necessary. This should be the default lookup order by GH. | |
| # So maybe ${{ runner.os }}-ccache- is enough. | |
| restore-keys: | | |
| ${{ runner.os }}-ccache-${{ env.RUN_NAME }} | |
| ${{ runner.os }}-ccache-${{ env.BASE_REF }} | |
| ${{ runner.os }}-ccache- | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| version: '5.15.2' # 5.12.7 is broken https://bugreports.qt.io/browse/QTBUG-81715, > 5.15.2 is not available on official archives (https://github.com/miurahr/aqtinstall/issues/636) | |
| host: 'mac' | |
| target: 'desktop' | |
| install-deps: 'true' | |
| cache: 'false' | |
| setup-python: 'false' # see https://github.com/jurplel/install-qt-action/issues/130 | |
| aqtversion: '==3.1.*' | |
| - name: Install build tools | |
| run: brew install autoconf automake libtool ninja | |
| - name: Cache contrib | |
| id: cache-contrib-os | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/OpenMS/contrib | |
| key: ${{ runner.os }}-contrib3 | |
| - name: Load contrib build | |
| if: steps.cache-contrib-os.outputs.cache-hit != 'true' | |
| run: | | |
| cd OpenMS/contrib | |
| curl -o contribbld.tar.gz https://abibuilder.cs.uni-tuebingen.de/archive/openms/contrib/macOS/10.15.5/x64/appleclang-11.0.0/contrib_build.tar.gz | |
| tar -xzf contribbld.tar.gz | |
| rm contribbld.tar.gz | |
| - name: Fix contrib install names | |
| shell: bash | |
| run: | | |
| shopt -s nullglob # ensure that for loop is only executated if there is at least one .dylib file | |
| for lib in $GITHUB_WORKSPACE/OpenMS/contrib/lib/*.dylib | |
| do | |
| install_name_tool -id $lib $lib | |
| done | |
| # create symlinks like brew https://github.com/Homebrew/homebrew-core/blob/master/Formula/qt.rb#L61 | |
| # Warning: Qt5_DIR will change meaning in the new jurplel/install-qt-action. Use QT_ROOT_DIR instead | |
| # https://github.com/jurplel/install-qt-action/blob/master/README_upgrade_guide.md | |
| pushd $Qt5_DIR/include | |
| for f in $Qt5_DIR/lib/*.framework/Headers | |
| do | |
| lnknm=$(basename "${f%/*}" ".framework") | |
| ln -s $f $lnknm | |
| done | |
| for f in $Qt5_DIR/lib/*.framework/Versions/5/Qt* | |
| do | |
| install_name_tool -id $f $f | |
| done | |
| popd | |
| - name: Add THIRDPARTY | |
| shell: bash | |
| run: | | |
| # initialize THIRDPARTY | |
| cd OpenMS | |
| git submodule update --init THIRDPARTY | |
| cd .. | |
| # add third-party binaries to PATH | |
| # use flat THIRDPARTY structure | |
| mkdir -p _thirdparty | |
| cp -R OpenMS/THIRDPARTY/MacOS/64bit/* _thirdparty/ | |
| cp -R OpenMS/THIRDPARTY/All/* _thirdparty/ | |
| # add third-party binaries to PATH | |
| for thirdpartytool in ${{ github.workspace }}/_thirdparty/* | |
| do | |
| echo $thirdpartytool >> $GITHUB_PATH | |
| done | |
| - name: Build macOS | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/OpenMS/bld/ | |
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cibuild.cmake | |
| # For debugging full logs: find $GITHUB_WORKSPACE/OpenMS/bld/ -name "LastBuild*" -type f -exec cat {} \; | |
| env: | |
| OS_PREFIX_PATH: "${{ env.Qt5_Dir }}/lib/cmake;${{ env.Qt5_Dir }}" | |
| CONTRIB_BUILD_DIRECTORY: "${{ github.workspace }}/OpenMS/contrib" | |
| CI_PROVIDER: "GitHub-Actions" | |
| CMAKE_GENERATOR: "Ninja" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-macOS-class-topp-${{ github.run_number }}" | |
| OPENMS_CONTRIB_LIBS: "${{ github.workspace }}/OpenMS/contrib" | |
| ENABLE_STYLE_TESTING: "OFF" | |
| ENABLE_TOPP_TESTING: "ON" | |
| ENABLE_CLASS_TESTING: "ON" | |
| WITH_GUI: "ON" | |
| ADDRESS_SANITIZER: "Off" | |
| BUILD_TYPE: "Release" | |
| OPENMP: "On" | |
| USE_STATIC_BOOST: "On" | |
| BUILD_FLAGS: "-j3" | |
| CMAKE_CCACHE_EXE: "ccache" | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 400M | |
| - name: Test macOS | |
| run: $LAUNCHER ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake | |
| env: | |
| LAUNCHER: "" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| CI_PROVIDER: "GitHub-Actions" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-macOS-clang-class-topp-${{ github.run_number }}" | |
| build-lnx: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| job-status: ${{ job.status }} | |
| steps: | |
| # Cancels older builds if still running | |
| - uses: rokroskar/workflow-run-cleanup-action@master | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master' && github.ref != 'refs/heads/develop'" | |
| - uses: actions/checkout@v3 | |
| name: Checkout sources | |
| with: | |
| path: OpenMS | |
| - name: Extract branch/PR infos | |
| shell: bash | |
| run: | | |
| cd OpenMS | |
| RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -) | |
| echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV | |
| echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV | |
| id: extract_branch | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install dev tools, xvfb, ... | |
| run: | | |
| sudo add-apt-repository universe | |
| sudo apt update | |
| sudo apt-get install -y build-essential cmake autoconf patch libtool git automake ninja-build xvfb ccache | |
| sudo apt-get install -y qtbase5-dev libqt5svg5-dev libqt5opengl5-dev | |
| sudo apt-get install -y libeigen3-dev libboost-random-dev libboost-regex-dev libboost-iostreams-dev libboost-date-time-dev libboost-math-dev libxerces-c-dev zlib1g-dev libsvm-dev libbz2-dev coinor-libcoinmp-dev libhdf5-dev | |
| - name: Setup ccache cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-ccache-${{ env.RUN_NAME }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-ccache-${{ env.RUN_NAME }} | |
| ${{ runner.os }}-ccache-${{ env.BASE_REF }} | |
| ${{ runner.os }}-ccache- | |
| - name: Add THIRDPARTY | |
| shell: bash | |
| run: | | |
| # initialize THIRDPARTY | |
| cd OpenMS | |
| git submodule update --init THIRDPARTY | |
| cd .. | |
| # add third-party binaries to PATH | |
| # use flat THIRDPARTY structure | |
| mkdir -p _thirdparty | |
| cp -R OpenMS/THIRDPARTY/Linux/64bit/* _thirdparty/ | |
| cp -R OpenMS/THIRDPARTY/All/* _thirdparty/ | |
| # add third-party binaries to PATH | |
| for thirdpartytool in ${{ github.workspace }}/_thirdparty/* | |
| do | |
| echo $thirdpartytool >> $GITHUB_PATH | |
| done | |
| - name: Build lnx | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/OpenMS/bld/ | |
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cibuild.cmake | |
| # For debugging full logs: find $GITHUB_WORKSPACE/OpenMS/bld/ -name "LastBuild*" -type f -exec cat {} \; | |
| env: | |
| OS_PREFIX_PATH: "${{ env.Qt5_Dir }}/lib/cmake;${{ env.Qt5_Dir }}" | |
| CONTRIB_BUILD_DIRECTORY: "/contrib-build" | |
| CI_PROVIDER: "GitHub-Actions" | |
| CMAKE_GENERATOR: "Ninja" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Ubuntu-gcc-class-topp-${{ github.run_number }}" | |
| ENABLE_STYLE_TESTING: "OFF" | |
| ENABLE_TOPP_TESTING: "ON" | |
| ENABLE_CLASS_TESTING: "ON" | |
| WITH_GUI: "ON" | |
| ADDRESS_SANITIZER: "Off" | |
| BUILD_TYPE: "Release" | |
| OPENMP: "On" | |
| USE_STATIC_BOOST: "Off" | |
| BUILD_FLAGS: "-j2" | |
| CMAKE_CCACHE_EXE: "ccache" | |
| CCACHE_BASEDIR: "${{ github.workspace }}" | |
| CCACHE_DIR: "${{ github.workspace }}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 400M | |
| CCACHE_SLOPPINESS: time_macros,include_file_ctime,include_file_mtime | |
| CCACHE_COMPILERCHECK: content | |
| - name: Test lnx | |
| run: $LAUNCHER ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake | |
| env: | |
| LAUNCHER: "xvfb-run" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| CI_PROVIDER: "GitHub-Actions" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Ubuntu-gcc-class-topp-${{ github.run_number }}" | |
| build-lnx-clang: | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| job-status: ${{ job.status }} | |
| steps: | |
| # Cancels older builds if still running | |
| - uses: rokroskar/workflow-run-cleanup-action@master | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master' && github.ref != 'refs/heads/develop'" | |
| - uses: actions/checkout@v3 | |
| name: Checkout sources | |
| with: | |
| path: OpenMS | |
| - name: Extract branch/PR infos | |
| shell: bash | |
| run: | | |
| cd OpenMS | |
| RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -) | |
| echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV | |
| echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV | |
| id: extract_branch | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install dev tools, xvfb, ... | |
| run: | | |
| sudo add-apt-repository universe | |
| sudo apt update | |
| sudo apt-get install build-essential cmake autoconf patch libtool git automake ninja-build xvfb ccache | |
| sudo apt-get install qtbase5-dev libqt5svg5-dev libqt5opengl5-dev | |
| sudo apt-get install libeigen3-dev libboost-random-dev libboost-regex-dev libboost-iostreams-dev libboost-date-time-dev libboost-math-dev libxerces-c-dev zlib1g-dev libsvm-dev libbz2-dev coinor-libcoinmp-dev libhdf5-dev | |
| - name: Setup ccache cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-clng-ccache-${{ env.RUN_NAME }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-clng-ccache-${{ env.RUN_NAME }} | |
| ${{ runner.os }}-clng-ccache-${{ env.BASE_REF }} | |
| ${{ runner.os }}-clng-ccache- | |
| - name: Add THIRDPARTY | |
| shell: bash | |
| run: | | |
| # initialize THIRDPARTY | |
| cd OpenMS | |
| git submodule update --init THIRDPARTY | |
| cd .. | |
| # add third-party binaries to PATH | |
| # use flat THIRDPARTY structure | |
| mkdir -p _thirdparty | |
| cp -R OpenMS/THIRDPARTY/Linux/64bit/* _thirdparty/ | |
| cp -R OpenMS/THIRDPARTY/All/* _thirdparty/ | |
| # add third-party binaries to PATH | |
| for thirdpartytool in ${{ github.workspace }}/_thirdparty/* | |
| do | |
| echo $thirdpartytool >> $GITHUB_PATH | |
| done | |
| - name: Set up Clang | |
| uses: egor-tensin/setup-clang@v1 | |
| with: | |
| version: 15 | |
| platform: x64 | |
| - name: Build lnx-clang | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/OpenMS/bld/ | |
| ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cibuild.cmake | |
| env: | |
| OS_PREFIX_PATH: "${{ env.Qt5_DIR }}/lib/cmake;${{ env.Qt5_DIR }}" | |
| CONTRIB_BUILD_DIRECTORY: "/contrib-build" | |
| CI_PROVIDER: "GitHub-Actions" | |
| CMAKE_GENERATOR: "Ninja" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Ubuntu-clang-class-topp-${{ github.run_number }}" | |
| ENABLE_STYLE_TESTING: "OFF" | |
| ENABLE_TOPP_TESTING: "ON" | |
| ENABLE_CLASS_TESTING: "ON" | |
| WITH_GUI: "ON" | |
| ADDRESS_SANITIZER: "Off" | |
| BUILD_TYPE: "Release" | |
| OPENMP: "On" | |
| USE_STATIC_BOOST: "Off" | |
| BUILD_FLAGS: "-j2" | |
| CMAKE_CCACHE_EXE: "ccache" | |
| CCACHE_BASEDIR: "${{ github.workspace }}" | |
| CCACHE_DIR: "${{ github.workspace }}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 400M | |
| CCACHE_SLOPPINESS: time_macros,include_file_ctime,include_file_mtime | |
| CCACHE_COMPILERCHECK: content | |
| - name: Test lnx-clang | |
| run: $LAUNCHER ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake | |
| env: | |
| LAUNCHER: "xvfb-run" | |
| SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS" | |
| CI_PROVIDER: "GitHub-Actions" | |
| BUILD_NAME: "${{ env.RUN_NAME }}-Ubuntu-clang-class-topp-${{ github.run_number }}" | |
| overall-status: | |
| runs-on: ubuntu-latest | |
| needs: [build-win, build-lnx, build-lnx-clang, build-macos] | |
| if: ${{ always() }} | |
| steps: | |
| - name: Check on failures | |
| if: ${{ needs.build-win.outputs.job-status != 'Success' || needs.build-lnx.outputs.job-status != 'Success' || needs.build-lnx-clang.outputs.job-status != 'Success' || needs.build-macos.outputs.job-status != 'Success' }} | |
| run: exit 1 |