fix broken tests

cbielow · Apr 18, 2024 · 3e3f28b · 3e3f28b
1 parent 626aa0a
commit 3e3f28b
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Showing 9 changed files with 18 additions and 21 deletions.
diff --git a/src/tests/topp/CMakeLists.txt b/src/tests/topp/CMakeLists.txt
@@ -485,16 +485,6 @@ add_test("TOPP_FileConverter_29_out" ${DIFF} -in1 FileConverter_29.tmp.mzML -in2
 add_test("TOPP_FileConverter_29_back" ${TOPP_BIN_PATH}/FileConverter -test -in FileConverter_29.tmp.mzML -in_type mzML -out FileConverter_29.back.tmp.mzML -out_type mzML)
 set_tests_properties("TOPP_FileConverter_29_out" PROPERTIES DEPENDS "TOPP_FileConverter_29")
 set_tests_properties("TOPP_FileConverter_29_back" PROPERTIES DEPENDS "TOPP_FileConverter_29")
-# Test with ion mobility
-add_test("TOPP_FileConverter_30" ${TOPP_BIN_PATH}/FileConverter -test -in ${DATA_DIR_TOPP}/FileConverter_30_input.mzML -change_im_format multiple_spectra -out_type mzML -out FileConverter_30.tmp.mzML)
-add_test("TOPP_FileConverter_30_out" ${DIFF} -in1 FileConverter_30.tmp.mzML -in2 ${DATA_DIR_TOPP}/FileConverter_30_output.mzML -whitelist "location=" "<offset")
-set_tests_properties("TOPP_FileConverter_30_out" PROPERTIES DEPENDS "TOPP_FileConverter_30")
-add_test("TOPP_FileConverter_31" ${TOPP_BIN_PATH}/FileConverter -test -in ${DATA_DIR_TOPP}/FileConverter_30_output.mzML -change_im_format concatenated -out_type mzML -out FileConverter_31.tmp.mzML)
-add_test("TOPP_FileConverter_31_out" ${DIFF} -in1 FileConverter_31.tmp.mzML -in2 ${DATA_DIR_TOPP}/FileConverter_31_output.mzML -whitelist "location=" "<offset")
-set_tests_properties("TOPP_FileConverter_31_out" PROPERTIES DEPENDS "TOPP_FileConverter_31")
-add_test("TOPP_FileConverter_32" ${TOPP_BIN_PATH}/FileConverter -test -in ${DATA_DIR_TOPP}/FileConverter_32_input.mzML -out_type mzML -out FileConverter_32.tmp.mzML)
-add_test("TOPP_FileConverter_32_out" ${DIFF} -in1 FileConverter_32.tmp.mzML -in2 ${DATA_DIR_TOPP}/FileConverter_32_output.mzML -whitelist "location=" "<offset")
-set_tests_properties("TOPP_FileConverter_32_out" PROPERTIES DEPENDS "TOPP_FileConverter_32")
 
 #------------------------------------------------------------------------------
 # FileFilter tests

diff --git a/src/tests/topp/FileInfo_19_output.txt b/src/tests/topp/FileInfo_19_output.txt
@@ -13,7 +13,8 @@ Number of spectra: 2
 Ranges:
   retention time: 18.25 .. 18.39 sec (0.0 min)
   mass-to-charge: 110.07 .. 1590.88
-  intensity:      0.00 .. 5057372.00
+    ion mobility: -65.00 .. -65.00
+       intensity: 0.00 .. 5057372.00
 
 Number of spectra per MS level:
   level 1: 1

diff --git a/src/tests/topp/FileInfo_1_output.txt b/src/tests/topp/FileInfo_1_output.txt
@@ -13,7 +13,8 @@ Number of spectra: 1
 Ranges:
   retention time: -1.00 .. -1.00 sec (0.0 min)
   mass-to-charge: 261.30 .. 783.50
-  intensity:      3672.00 .. 272411.00
+    ion mobility: <none>
+       intensity: 3672.00 .. 272411.00
 
 Number of spectra per MS level:
   level 2: 1

diff --git a/src/tests/topp/FileInfo_2_output.txt b/src/tests/topp/FileInfo_2_output.txt
@@ -13,7 +13,8 @@ Number of spectra: 8
 Ranges:
   retention time: 0.00 .. 6.00 sec (0.1 min)
   mass-to-charge: 500.00 .. 1100.00
-  intensity:      50.00 .. 400.00
+    ion mobility: <none>
+       intensity: 50.00 .. 400.00
 
 Number of spectra per MS level:
   level 1: 8

diff --git a/src/tests/topp/FileInfo_4_output.txt b/src/tests/topp/FileInfo_4_output.txt
@@ -14,7 +14,8 @@ Number of spectra: 20
 Ranges:
   retention time: 0.26 .. 37.64 sec (0.6 min)
   mass-to-charge: 207.51 .. 1496.08
-  intensity:      12.15 .. 25903.89
+    ion mobility: <none>
+       intensity: 12.15 .. 25903.89
 
 Number of spectra per MS level:
   level 1: 14

diff --git a/src/tests/topp/FileInfo_5_output.txt b/src/tests/topp/FileInfo_5_output.txt
@@ -15,7 +15,8 @@ Number of spectra: 10
 Ranges:
   retention time: 20.87 .. 39.97 sec (0.3 min)
   mass-to-charge: 500.07 .. 1497.28
-  intensity:      16.30 .. 38920.12
+    ion mobility: <none>
+       intensity: 16.30 .. 38920.12
 
 Number of spectra per MS level:
   level 1: 4

diff --git a/src/tests/topp/FileInfo_6_output.txt b/src/tests/topp/FileInfo_6_output.txt
@@ -14,7 +14,8 @@ Number of spectra: 2
 Ranges:
   retention time: 474.56 .. 475.32 sec (0.0 min)
   mass-to-charge: 937.28 .. 941.20
-  intensity:      1639.00 .. 18025.00
+    ion mobility: <none>
+       intensity: 1639.00 .. 18025.00
 
 Number of spectra per MS level:
   level 1: 2

diff --git a/src/tests/topp/FileInfo_9_output.txt b/src/tests/topp/FileInfo_9_output.txt
@@ -15,7 +15,8 @@ Number of spectra: 4
 Ranges:
   retention time: 5.10 .. 5.40 sec (0.0 min)
   mass-to-charge: 0.00 .. 18.00
-  intensity:      1.00 .. 20.00
+    ion mobility:  <none>
+       intensity: 1.00 .. 20.00
 
 Number of spectra per MS level:
   level 1: 3

diff --git a/src/topp/FileInfo.cpp b/src/topp/FileInfo.cpp
@@ -173,12 +173,12 @@ class TOPPFileInfo : public TOPPBase
     os << "Ranges:" << '\n'
        << "  retention time: " << String::number(map.getMinRT(), 2) << " .. " << String::number(map.getMaxRT(), 2) << " sec ("
        << String::number((map.getMaxRT() - map.getMinRT()) / 60, 1) << " min)\n"
-       << "  mass-to-charge: " << String::number(map.getMinMZ(), 2) << " .. " << String::number(map.getMaxMZ(), 2) << '\n'
-       << "    ion mobility: ";
+       << "  mass-to-charge: " << String::number(map.getMinMZ(), 2) << " .. " << String::number(map.getMaxMZ(), 2) << '\n';
     if constexpr (std::is_base_of < RangeMobility, Map>())
     {
-      if (map.RangeMobility::isEmpty()) os << " <none>\n";
-      else { os << String::number(map.getMinMobility(), 2) << " .. " << String::number(map.getMaxMobility(), 2) << '\n'; }
+      os << "    ion mobility: ";
+      if (map.RangeMobility::isEmpty()) os << "<none>\n";
+      else os << String::number(map.getMinMobility(), 2) << " .. " << String::number(map.getMaxMobility(), 2) << '\n';
     }
     os << "       intensity: " << String::number(map.getMinIntensity(), 2) << " .. " << String::number(map.getMaxIntensity(), 2) << '\n'
        << '\n';