From 90c83bc864403abfb4c37525fda5dc36e2a20b34 Mon Sep 17 00:00:00 2001 From: Eric Scott Date: Thu, 15 Aug 2024 12:41:06 -0700 Subject: [PATCH] update schedule --- _freeze/index/execute-results/html.json | 9 ++++----- index.qmd | 2 +- schedule.csv | 24 ++++++++++++------------ 3 files changed, 17 insertions(+), 18 deletions(-) diff --git a/_freeze/index/execute-results/html.json b/_freeze/index/execute-results/html.json index 904b877..2d48ae6 100644 --- a/_freeze/index/execute-results/html.json +++ b/_freeze/index/execute-results/html.json @@ -1,10 +1,9 @@ { - "hash": "3db453b9b85316c3b2ba2e9290e6ed66", + "hash": "a17d501b71511cba5f5c50430995d04c", "result": { - "markdown": "---\ntitle: Reproducibility and Data Science in R\nsubtitle: \"Fall 2023\"\nformat: html\ncitation:\n title: Syllabus\n---\n\n\nWelcome to the syllabus for the CCT Data Science fall workshop series: **Reproducibility and Data Science in R.** If you didn't register for the course this year, sign up for our [mailing list](https://datascience.cct.arizona.edu/contact) to be notified when enrollment opens for next year's iteration and to be notified of our other monthly workshops.\n\n## Schedule (tentative)\n\nWe'll meet on Tuesdays and Thursdays from 11am to 1pm via Zoom (link)\n\n\n\n\n::: {.cell}\n::: {.cell-output-display}\n```{=html}\n
\n\n\n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n \n \n
LessonDateThemeTopicLinks
1Tue, 9/5Manage & OrganizeProject managment and coding best practices
\n
2Thu, 9/7Share & CollaborateUsing shell commands
\n
3Tue, 9/12Share & CollaborateVersion control with git
\n
4Thu, 9/14Share & CollaborateDeveloping code on GitHub
\n
5Tue, 9/19Share & CollaborateCollaborating with GitHub
\n
6Thu, 9/21Tidy & WrangleData Manipulation
\n
7Tue, 9/26Repeat & ReproduceIntermediate R programming I
\n
8Thu, 9/28Repeat & ReproduceIntermediate R programming II
\n
9Tue, 10/3Document & PublishDocumentation and literate programming
\n
10Thu, 10/5Document & PublishGetting credit for your hard work
\n
—Tue, 10/17HelpDrop-in help session—
—Tue, 10/24Show & TellAn opportunity for you to show off what you've learned—
\n
\n```\n:::\n:::\n\n\n## Code of Conduct\n\n> Our group's mission is to enable scientists.\n> This means treating people with respect and responding in a polite and helpful way.\n>\n> Our group is committed to ensuring a harassment-free experience for everyone, regardless of level of experience, gender, gender identity and expression, sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.\n>\n> Examples of unacceptable behavior by members, collaborators, and contributors include the use of sexual language or imagery, derogatory comments or personal attacks, trolling, public or private harassment, insults, or other unprofessional conduct.\n\nRead our full [code of conduct](https://osf.io/tzmhp/wiki/Code%20of%20Conduct/) and please report any violations or concerns to the course instructors or to Kristina Riemer ([kristinariemer\\@arizona.edu](mailto:kristinariemer@arizona.edu)).\n\n## Helpful Reads\n\nThis workshop series doesn't have anything like \"required reading\", but we think these books and websites are good companions.\n\nData analysis in R:\n\n- [R for Data Science (2e)](https://r4ds.hadley.nz/)\n- [Building reproducible analytical pipelines with R](https://raps-with-r.dev/) \n\nBest practices for reproducibility:\n\n- [Good enough practices in scientific computing](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510)\n- [Data organization in spreadsheets](https://doi.org/10.1080/00031305.2017.1375989)\n- [A beginner's guide to conducting reproducible research](https://doi.org/10.1002/bes2.1801)\n- [The Turing Way: Guide for Reproducible Research](https://the-turing-way.netlify.app/reproducible-research/reproducible-research)\n\nVersion control:\n\n- [Excuse me, do you have a moment to talk about version control?](https://doi.org/10.7287/peerj.preprints.3159v2)\n- [Happy Git and GitHub for the useR](https://happygitwithr.com/)\n", - "supporting": [ - "index_files" - ], + "engine": "knitr", + "markdown": "---\ntitle: Reproducibility and Data Science in R\nsubtitle: \"Fall 2023\"\nformat: html\ncitation:\n title: Syllabus\n---\n\n\nWelcome to the syllabus for the CCT Data Science fall workshop series: **Reproducibility and Data Science in R.** If you didn't register for the course this year, sign up for our [mailing list](https://datascience.cct.arizona.edu/contact) to be notified when enrollment opens for next year's iteration and to be notified of our other monthly workshops.\n\n## Schedule (tentative)\n\nWe'll meet on Tuesdays and Thursdays from 11am to 1pm via Zoom (link)\n\n\n\n\n::: {.cell}\n::: {.cell-output-display}\n\n```{=html}\n
\n\n\n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n\n\n\n\n \n \n \n
LessonDateThemeTopicLinks
1Tue, 9/3Manage & OrganizeProject managment and documentation
\n
2Thu, 9/5Document & PublishLiterate programming with Quarto
3Tue, 9/10Share & CollaborateFile systems and command line
\n
4Thu, 9/12Share & CollaborateVersion control with git
\n
5Tue, 9/17Share & CollaborateDeveloping code on GitHub
\n
6Thu, 9/19Share & CollaborateCollaborating with GitHub
\n
7Tue, 9/24Tidy & WrangleData manipulation & coding best practices
\n
8Thu, 9/26Repeat & ReproduceIntermediate R programming I
\n
9Tue, 10/1Repeat & ReproduceIntermediate R programming II
\n
10Thu, 10/3Document & PublishGetting credit for your hard work
\n
11Tue, 10/8ReviewDrop-in co-working—
12Thu, 10/10Reproducibility ColloquiumAn opportunity for you to show off what you've learned—
\n
\n```\n\n:::\n:::\n\n\n## Code of Conduct\n\n> Our group's mission is to enable scientists.\n> This means treating people with respect and responding in a polite and helpful way.\n>\n> Our group is committed to ensuring a harassment-free experience for everyone, regardless of level of experience, gender, gender identity and expression, sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.\n>\n> Examples of unacceptable behavior by members, collaborators, and contributors include the use of sexual language or imagery, derogatory comments or personal attacks, trolling, public or private harassment, insults, or other unprofessional conduct.\n\nRead our full [code of conduct](https://osf.io/tzmhp/wiki/Code%20of%20Conduct/) and please report any violations or concerns to the course instructors or to Kristina Riemer ([kristinariemer\\@arizona.edu](mailto:kristinariemer@arizona.edu)).\n\n## Helpful Reads\n\nThis workshop series doesn't have anything like \"required reading\", but we think these books and websites are good companions.\n\nData analysis in R:\n\n- [R for Data Science (2e)](https://r4ds.hadley.nz/)\n- [Building reproducible analytical pipelines with R](https://raps-with-r.dev/) \n\nBest practices for reproducibility:\n\n- [Good enough practices in scientific computing](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510)\n- [Data organization in spreadsheets](https://doi.org/10.1080/00031305.2017.1375989)\n- [A beginner's guide to conducting reproducible research](https://doi.org/10.1002/bes2.1801)\n- [The Turing Way: Guide for Reproducible Research](https://the-turing-way.netlify.app/reproducible-research/reproducible-research)\n\nVersion control:\n\n- [Excuse me, do you have a moment to talk about version control?](https://doi.org/10.7287/peerj.preprints.3159v2)\n- [Happy Git and GitHub for the useR](https://happygitwithr.com/)\n", + "supporting": [], "filters": [ "rmarkdown/pagebreak.lua" ], diff --git a/index.qmd b/index.qmd index 736ea54..fd7b734 100644 --- a/index.qmd +++ b/index.qmd @@ -12,7 +12,7 @@ Welcome to the syllabus for the CCT Data Science fall workshop series: **Reprodu We'll meet on Tuesdays and Thursdays from 11am to 1pm via Zoom (link) - + ```{r} #| echo: false diff --git a/schedule.csv b/schedule.csv index da0723e..86831dc 100644 --- a/schedule.csv +++ b/schedule.csv @@ -1,13 +1,13 @@ Lesson,Date,Theme,Topic,Links,Notes -1,2023-09-05,Manage & Organize,Project managment and coding best practices,[slides](lessons/1-project-management/slides.html),"Also, setup RStudio for reproducibility" -2,2023-09-07,Share & Collaborate,Using shell commands,[slides](lessons/2-shell/slides.html),"Install git, carpentries shell episodes 1 & 2" -3,2023-09-12,Share & Collaborate,Version control with git,[slides](lessons/3-git/slides.html),"git novice lessons 2-4, then git pane of RStudio" -4,2023-09-14,Share & Collaborate,Developing code on GitHub,[slides](lessons/4-github-basics/slides.html),"git_sitrep(), use_github(), git novice lesson 7" -5,2023-09-19,Share & Collaborate,Collaborating with GitHub,[slides](lessons/5-github-collab/slides.html),"git novice lesson 8, pr_init(), pr_push(), pr_finish()" -6,2023-09-21,Tidy & Wrangle,Data Manipulation,[slides](lessons/6-data-manipulation/slides.html),data carpentry R ecology episodes 2 & 3 -7,2023-09-26,Repeat & Reproduce,Intermediate R programming I,[slides](lessons/7-intermediate-r-1/slides.html),functions -8,2023-09-28,Repeat & Reproduce,Intermediate R programming II,[slides](lessons/8-intermediate-r-2/slides.html),iteration (and anonymous functions) -9,2023-10-03,Document & Publish,Documentation and literate programming,"[slides](lessons/9-markdown-quarto/slides.html), [getting help](lessons/11-getting-help/slides.html)","README.md, Quarto" -10,2023-10-05,Document & Publish,Getting credit for your hard work,[slides](lessons/10-get-credit/slides.html),"renv, LICENSE, CITATION.cff, Zenodo, GitHub releases" -,2023-10-17,Help,Drop-in help session,,"same day as SORTEE, might need to re-schedule" -,2023-10-24,Show & Tell,An opportunity for you to show off what you've learned,, +1,2024-09-03,Manage & Organize,Project managment and documentation,[slides](lessons/1-project-management/slides.html),"Also, setup RStudio for reproducibility" +2,2024-09-05,Document & Publish,Literate programming with Quarto,"[slides](lessons/9-markdown-quarto/slides.html), [getting help](lessons/11-getting-help/slides.html)", +3,2024-09-10,Share & Collaborate,File systems and command line,[slides](lessons/2-shell/slides.html),"Install git, carpentries shell episodes 1 & 2" +4,2024-09-12,Share & Collaborate,Version control with git,[slides](lessons/3-git/slides.html),"git novice lessons 2-4, then git pane of RStudio" +5,2024-09-17,Share & Collaborate,Developing code on GitHub,[slides](lessons/4-github-basics/slides.html),"git_sitrep(), use_github(), git novice lesson 7" +6,2024-09-19,Share & Collaborate,Collaborating with GitHub,[slides](lessons/5-github-collab/slides.html),"git novice lesson 8, pr_init(), pr_push(), pr_finish()" +7,2024-09-24,Tidy & Wrangle,Data manipulation & coding best practices,[slides](lessons/6-data-manipulation/slides.html),data carpentry R ecology episodes 2 & 3 +8,2024-09-26,Repeat & Reproduce,Intermediate R programming I,[slides](lessons/7-intermediate-r-1/slides.html),functions +9,2024-10-01,Repeat & Reproduce,Intermediate R programming II,[slides](lessons/8-intermediate-r-2/slides.html),iteration (and anonymous functions) +10,2024-10-03,Document & Publish,Getting credit for your hard work,[slides](lessons/10-get-credit/slides.html),"renv, LICENSE, CITATION.cff, Zenodo, GitHub releases" +11,2024-10-08,Review,Drop-in co-working,, +12,2024-10-10,Reproducibility Colloquium,An opportunity for you to show off what you've learned,,