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install.sh
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install.sh
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#!/bin/bash
####################################################################################################################################
####################################################################################################################################
#### ####
#### ParaMonte: Parallel Monte Carlo and Machine Learning Library. ####
#### ####
#### Copyright (C) 2012-present, The Computational Data Science Lab ####
#### ####
#### This file is part of the ParaMonte library. ####
#### ####
#### LICENSE ####
#### ####
#### https://github.com/cdslaborg/paramonte/blob/main/LICENSE.md ####
#### ####
####################################################################################################################################
####################################################################################################################################
#### See the file install.sh.usage in the same folder for usage guidelines of this Batch script.
####
#### NOTE: Do not change the contents of this file unless you know what the consequences are.
#### This is the Bash script file that builds objects, shared libraries,
#### as well as the test and example binaries of the ParaMonte library in
#### POSIX-like (non-Windows) environments (such as Unix Shell, Git Bash).
#### Upon invocation of this file from a Bash command-line interface,
#### this script will parse the user-provided flags and their values
#### to build the ParaMonte library.
####
#### To redirect the output to an external file (e.g., install.sh.out), try:
####
#### install.sh >install.sh.out 2>&1
####
#### to redirect output to the external file install.sh.out and run the installation in background, try:
####
#### install.sh >install.sh.out 2>&1 &; jobs; disown
#### jobs; disown
# The following lines must appear in the specified order before anything else in the script.
#paramonte_dir="${paramonte_dir:-${PWD%/}}"
FILE_DIR="$( cd "$(dirname "${BASH_SOURCE[0]}")" >/dev/null 2>&1 && pwd )"
caller_name="$(basename "${BASH_SOURCE[0]}")"
source ./auxil/install.init.sh
#workingDir="$(pwd)"
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Reset the script arguments.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [ 0 -lt 1 ]; then # just to allow toggling in notepad++.
unset bdir
export FOR_COARRAY_NUM_IMAGES=3
ddir="${paramonte_dir}/bin"
flag_ddir="-Dddir=${ddir}"
unset list_build
unset list_checking
unset list_fc
unset list_lang
unset list_lib
unset list_mem
unset list_par
unset flag_bench
unset flag_benchpp
unset flag_blas
unset flag_codecov
unset flag_cfi
unset flag_deps
unset flag_exam
unset flag_exampp
unset flag_fpp
unset flag_fresh
unset flag_j
unset flag_lapack
unset flag_matlabdir
unset flag_me
unset flag_mod
unset flag_nproc
unset flag_perfprof
unset flag_pdt
unset flag_purity
unset flag_test
unset flag_ski
unset flag_iki
unset flag_lki
unset flag_cki
unset flag_rki
#### Flag to skip timely production steps in development and documentation modes.
#### if `--dev` is specified by the user, the macro `dev_enabled` will be set to `1`,
#### preventing the package copy to the final binary installation directory.
unset flag_dev
ntry=2
while [ "$1" != "" ]; do
case "$1" in
#### list args
--build ) shift
verifyArgNotKey "$1" --build
#verifyArgNotEmpty "$1" --build
list_build="$1"
;;
--checking ) shift
verifyArgNotKey "$1" --checking
#verifyArgNotEmpty "$1" --checking
list_checking="$1"
;;
--fc ) shift
verifyArgNotKey "$1" --fc
#verifyArgNotEmpty "$1" --fc
list_fc="$1"
;;
--lang ) shift
verifyArgNotKey "$1" --lang
#verifyArgNotEmpty "$1" --lang
list_lang="$1"
;;
--lib ) shift
verifyArgNotKey "$1" --lib
#verifyArgNotEmpty "$1" --lib
list_lib="$1"
;;
--mem ) shift
verifyArgNotKey "$1" --mem
#verifyArgNotEmpty "$1" --mem
list_mem="$1"
;;
--par ) shift
verifyArgNotKey "$1" --par
#verifyArgNotEmpty "$1" --par
list_par="$1"
;;
#### flag args
--bench ) shift
verifyArgNotKey "$1" --bench
#verifyArgNotEmpty "$1" --bench
flag_bench="-Dbench=$1"
;;
--benchpp ) shift
verifyArgNotKey "$1" --benchpp
#verifyArgNotEmpty "$1" --benchpp
flag_benchpp="-Dbenchpp=$1"
;;
--blas ) shift
verifyArgNotKey "$1" --blas
#verifyArgNotEmpty "$1" --blas
flag_blas="-Dblas=$1"
;;
--codecov ) shift
verifyArgNotKey "$1" --codecov
#verifyArgNotEmpty "$1" --codecov
flag_codecov="-Dcodecov=$1"
;;
--deps ) shift
verifyArgNotKey "$1" --deps
#verifyArgNotEmpty "$1" --deps
flag_deps="-Ddeps=$1"
;;
--exam ) shift
verifyArgNotKey "$1" --exam
#verifyArgNotEmpty "$1" --exam
flag_exam="-Dexam=$1"
;;
--exampp ) shift
verifyArgNotKey "$1" --exampp
#verifyArgNotEmpty "$1" --exampp
flag_exampp="-Dexampp=$1"
;;
--cfi ) shift
verifyArgNotKey "$1" --cfi
#verifyArgNotEmpty "$1" --cfi
flag_cfi="-Dcfi=$1"
;;
--fpp ) shift
verifyArgNotKey "$1" --fpp
#verifyArgNotEmpty "$1" --fpp
flag_fpp="-Dfpp=$1"
;;
--fresh ) shift
verifyArgNotKey "$1" --fresh
#verifyArgNotEmpty "$1" --fresh
flag_fresh="-Dfresh=$1"
;;
--lapack ) shift
verifyArgNotKey "$1" --lapack
#verifyArgNotEmpty "$1" --lapack
flag_lapack="-Dlapack=$1"
;;
--matlabdir ) shift
verifyArgNotKey "$1" --matlabdir
#verifyArgNotEmpty "$1" --matlabdir
flag_matlabdir="-Dmatlabdir=\"$1\""
;;
--me ) shift
verifyArgNotKey "$1" --me
#verifyArgNotEmpty "$1" --me
flag_me="-Dme=\"$1\""
;;
--mod ) shift
verifyArgNotKey "$1" --mod
#verifyArgNotEmpty "$1" --mod
flag_mod="-Dmod=$1"
;;
--nproc ) shift
verifyArgNotKey "$1" --nproc
#verifyArgNotEmpty "$1" --nproc
isNumericValue="$(isnumeric ${nproc})"
if ! [ "${isNumericValue}" = "true" ]; then
reportBadValue "--nproc" $nproc "The spoecified number of processors must be a positive integer."
fi
FOR_COARRAY_NUM_IMAGES="$1"
flag_nproc="-Dnproc=$1"
;;
--perfprof ) shift
verifyArgNotKey "$1" --perfprof
#verifyArgNotEmpty "$1" --perfprof
flag_perfprof="-Dperfprof=$1"
;;
--pdt ) shift
verifyArgNotKey "$1" --pdt
#verifyArgNotEmpty "$1" --pdt
flag_pdt="-Dpdt=$1"
;;
--purity ) shift
verifyArgNotKey "$1" --purity
#verifyArgNotEmpty "$1" --purity
flag_purity="-Dpurity=$1"
;;
--test ) shift
verifyArgNotKey "$1" --test
#verifyArgNotEmpty "$1" --test
flag_test="-Dtest=$1"
;;
#### flag args: type kind
--ski ) shift
verifyArgNotKey "$1" --ski
#verifyArgNotEmpty "$1" --ski
flag_ski="-Dski=$1"
;;
--iki ) shift
verifyArgNotKey "$1" --iki
#verifyArgNotEmpty "$1" --iki
flag_iki="-Diki=$1"
;;
--lki ) shift
verifyArgNotKey "$1" --lki
#verifyArgNotEmpty "$1" --lki
flag_lki="-Dlki=$1"
;;
--cki ) shift
verifyArgNotKey "$1" --cki
#verifyArgNotEmpty "$1" --cki
flag_cki="-Dcki=$1"
;;
--rki ) shift
verifyArgNotKey "$1" --rki
#verifyArgNotEmpty "$1" --rki
flag_rki="-Drki=$1"
;;
#### other args
--bdir ) shift
verifyArgNotKey "$1" --bdir
#verifyArgNotEmpty "$1" --bdir
bdir="$1"
;;
--ddir ) shift
verifyArgNotKey "$1" --ddir
#verifyArgNotEmpty "$1" --ddir
ddir="$1"
flag_ddir="-Dddir=${ddir}"
;;
--help ) usage
echo >&2 ""
echo >&2 ""
exit
;;
-j ) shift
verifyArgNotKey "$1" -j
#verifyArgNotEmpty "$1" -j
flag_j="-j $1"
;;
--dev ) flag_dev="-Ddev_enabled=1"
ntry=1
;;
* ) usage
echo >&2 ""
echo >&2 "-- ParaMonte - FATAL: The specified flag $1 does not exist."
echo >&2 "-- ParaMonte - FATAL: The specified flag $1 does not exist."
echo >&2 ""
echo >&2 "-- ParaMonte - gracefully exiting."
echo >&2 ""
echo >&2 ""
exit 1
esac
shift
done
fi
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Set the default values for the input command line arguments.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [ 0 -lt 1 ]; then # just to allow toggling in notepad++.
#### list args
if [ "${list_build}" = "" ]; then
list_build="release"
else
list_build="$(getLowerCase "$list_build")"
fi
if [ "${list_checking}" = "" ]; then
list_checking="nocheck"
else
list_checking="$(getLowerCase "$list_checking")"
fi
if [ "${list_fc}" = "" ]; then
# On Windows OS, particularly with MinGW, CMake fails if the specified compiler name or path does not have the
# the file extension ".exe". Given that this extension is unlikely to change in the future, and that it is not used
# on Unix systems, try suffixing the extension to the compiler file path. If it fails, use the default specified path.
compilers=("ifort" "ifx" "gfortran-13" "gfortran-12" "gfortran-11" "gfortran-10" "gfortran")
if [ "${os}" = "mingw" ] || [ "${os}" = "msys" ] || [ "${os}" = "cygwin" ]; then
extensions=(".exe" "")
else
extensions=("")
fi
for compiler in "${compilers[@]}"; do
for extension in "${extensions[@]}"; do
echo >&2 "${pmnote} Checking existence of compiler \"${compiler}\" executable with extension \"${extension}\""
# check if the specified compiler can be found in the environment.
if command -v "${compiler}${extension}" >/dev/null 2>&1; then
list_fc="$(command -v "${compiler}${extension}")"
break 2
fi
done
done
if [ "${list_fc}" = "" ]; then
echo >&2 "${pmwarn} Failed to detect any compatible Fortran compiler in the environment."
echo >&2 "${pmwarn} You can manually specify the Fortran compiler or its path via the install script flag \"--fc\"."
echo >&2 "${pmwarn} The build will proceed with no guarantee of success."
list_fc="default"
else
echo >&2 "${pmnote} The identified Fortran compiler path is: fc=\"${list_fc}\""
fi
fi
if [ "${list_lang}" = "" ]; then
list_lang="fortran"
else
list_lang="$(getLowerCase "$list_lang")"
list_lang="${list_lang/c++/cpp}"
fi
if [ "${list_lib}" = "" ]; then
list_lib="shared"
else
# Replace `dynamic` with `shared`.
list_lib=${list_lib/dynamic/shared}
list_lib="$(getLowerCase "$list_lib")"
fi
if [ "${list_mem}" = "" ]; then
list_mem="heap"
else
list_mem="$(getLowerCase "$list_mem")"
fi
if [ "${list_par}" = "" ]; then
list_par="serial"
else
# Replace `none` with `serial`.
list_par=${list_par/none/serial}
list_par="$(getLowerCase "$list_par")"
fi
if [ "${flag_j}" = "" ]; then
flag_j="-j"
fi
#### Optional arguments
if [ "${flag_exampp}" = "" ] && ! [ "${flag_exam}" = "" ] ; then
flag_exampp="${flag_exam/-Dexam=/-Dexampp=}"
fi
if [ "${flag_benchpp}" = "" ] && ! [ "${flag_bench}" = "" ] ; then
flag_benchpp="${flag_bench/-Dbench=/-Dbenchpp=}"
fi
fi
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Set CMake default flags.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [ 0 -lt 1 ]; then # just to allow toggling in notepad++.
if [[ "${flag_fresh}" =~ .*"prereq".* ]]; then
if [ -d "${paramonte_req_dir}" ]; then
echo >&2 "${pmnote} Removing the old prerequisites of the ParaMonte library build at: paramonte_req_dir=\"${paramonte_req_dir}\""
rm -rf "${paramonte_req_dir}"
fi
fi
# Set the CMake build generator.
flag_g="-G"
unset cmakeBuildGenerator
if [ "${os}" = "mingw" ]; then
cmakeBuildGenerator="MinGW Makefiles"
elif [ "${os}" = "msys" ]; then
cmakeBuildGenerator="MSYS Makefiles"
else
cmakeBuildGenerator="Unix Makefiles"
fi
fi
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Configure and build the ParaMonte library.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
for fc in ${list_fc//;/$'\n'}; do # replace `;` with newline character.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Set up the CMake fc flag.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
unset flag_fc
if [ -f "${fc}" ]; then
fcpath="${fc}"
flag_fc="-Dfc=${fcpath}"
elif ! [[ "${fc}" =~ [Dd][Ee][Ff][Aa][Uu][Ll][Tt] ]]; then
fcpath="$(getPathFC "${fc}")"
if [ -f "${fcpath}" ]; then
flag_fc="-Dfc=${fcpath}"
else
echo >&2 "${pmfatal} Failed to detect the full path for the specified compiler: fcpath=\"${fcpath}\""
reportBadValue "--fc" "${fc}"
fi
echo >&2 "${pmnote} Fortran compiler path: fcpath=\"${fcpath}\""
fi
# Get the compiler ID and version to be used in the build path.
csid=$(getCSID "${fcpath}")
csvs=$(getCSVS "${fcpath}" "${csid}")
echo >&2 "${pmnote} compiler suite: ${csid}"
echo >&2 "${pmnote} compiler version: ${csvs}"
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Build the ParaMonte library with the specified compiler.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
for lang in ${list_lang//;/$'\n'}; do # replace `;` with newline character.
flag_lang="-Dlang=${lang}"
#lang_is_dynamic="false"
#if [ "${lang}" = "julia" ] || [ "${lang}" = "matlab" ] || [ "${lang}" = "mathematica" ] || [ "${lang}" = "python" ] || [ "${lang}" = "r" ]; then
# lang_is_dynamic="true"
#fi
## Set source preprocessing output on by default for Fortran.
#if [ "${lang}" = "fortran" ] && [ "${flag_fpp}" = "" ]; then
# flag_fpp="-Dfpp=generic"
#fi
for build in ${list_build//;/$'\n'}; do # replace `;` with newline character.
flag_build="-Dbuild=${build}"
for lib in ${list_lib//;/$'\n'}; do # replace `;` with newline character.
flag_lib="-Dlib=${lib}"
for mem in ${list_mem//;/$'\n'}; do # replace `;` with newline character.
flag_mem="-Dmem=${mem}"
for par in ${list_par//;/$'\n'}; do # replace `;` with newline character.
flag_par="-Dpar=${par}"
for checking in ${list_checking//;/$'\n'}; do # replace `;` with newline character.
flag_checking="-Dchecking=${checking}"
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Set the ParaMonte CMake build directory.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [ 0 -lt 1 ]; then # just to allow toggling in notepad++.
# First, determine the MPI library name to be used in the ParaMonte library name and build directory.
if [ "${par}" = "mpi" ]; then
#if [ -z ${me+x} ]; then
if [ "${me}" = "" ]; then
me=mpiexec
fi
if ! [[ -f "${me}" ]]; then
me="$(command -v ${me})"
if ! [[ -f "${me}" ]]; then
echo >&2 "${pmwarn} The specified mpiexec path does not appear to be a valid path to an mpiexec executable: me=\"${me}\""
fi
fi
parname=mpi
mpiVersionInfo="$(${me} --version)"
if [[ "${mpiVersionInfo}" =~ .*"Intel".* ]]; then
parname="impi"
elif [[ "${mpiVersionInfo}" =~ .*[oO][pP][eE][nN][rR][tT][eE].* ]] || [[ "${mpiVersionInfo}" =~ .*[oO][pP][eE][nN]-?[mM][pP][iI].* ]]; then
parname="openmpi"
elif [[ "${mpiVersionInfo}" =~ .*[mM][pP][iI][cC][hH].* ]]; then
parname="mpich"
else # look for mpichversion
mpichversion_path="$(dirname ${me})"/mpichversion
if [ -f "${mpichversion_path}" ] && [[ "$(mpichversion_path)" =~ .*[mM][pP][iI][cC][hH].* ]]; then
parname="mpich"
fi
fi
if [ "${parname}" = "mpi" ]; then
echo >&2 "${pmwarn} The MPI library vendor could not be identified."
echo >&2 "${pmwarn} The MPI library behavior does not match the Intel, MPICH, or OpenMPI libraries."
echo >&2 "${pmwarn} The ParaMonte library name will be suffixed with the generic \"${parname}\" label."
fi
elif [ "${par}" = "omp" ]; then
parname="openmp"
else
parname="${par}"
fi
#if [ -z ${bdir+x} ]; then
if [ "${bdir}" = "" ]; then
paramonte_bld_dir="${paramonte_dir}/bld/${os}/${arch}/${csid}/${csvs}/${build}/${lib}/${mem}/${parname}/${checking}/${lang}"
if [[ "${flag_perfprof}" =~ .*"all".* ]]; then
paramonte_bld_dir="${paramonte_bld_dir}/perfprof"
fi
if [[ "${flag_codecov}" =~ .*"all".* ]]; then
paramonte_bld_dir="${paramonte_bld_dir}/codecov"
fi
echo >&2 "${pmnote} The ParaMonte library build directory: paramonte_bld_dir=\"${paramonte_bld_dir}\""
else
echo >&2 "${pmnote} User-specified library build directory detected: bdir=\"${bdir}\""
paramonte_bld_dir="${bdir}"
fi
if [[ "${flag_fresh}" =~ .*"all".* ]]; then
if [ -d "${paramonte_bld_dir}" ]; then
echo >&2 "${pmnote} Removing the old prerequisites of the ParaMonte library build at: paramonte_bld_dir=\"${paramonte_bld_dir}\""
rm -rf "${paramonte_bld_dir}"
fi
fi
# Make the build directory if needed.
if ! [ -d "${paramonte_bld_dir}" ]; then
echo >&2 "${pmnote} Generating the ParaMonte build directory..."
mkdir -p "${paramonte_bld_dir}/"
fi
fi
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Configure and build the library via CMake.
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [ 0 -lt 1 ]; then # just to allow toggling in notepad++.
echo >&2 "${pmnote} All generated build files will be stored at: ${paramonte_bld_dir}"
echo >&2 "${pmnote} Changing directory to: ${paramonte_bld_dir}"
echo >&2 ""
echo >&2 "########################################################################################%%"
echo >&2 ""
echo >&2 "${pmnote} Invoking CMake as:"
echo >&2 ""
set -x
#### The following loop temporarily bypasses an existing bug where the first fresh installation
#### does not copy the FPP source files to the deployment and installation directories.
for ((n=0; n<$ntry; n++)); do
(cd "${paramonte_bld_dir}" && \
cmake \
"${paramonte_dir}" \
${flag_g} "${cmakeBuildGenerator}" \
"-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON" \
"${flag_ddir}" \
"${flag_build}" \
"${flag_checking}" \
"${flag_lang}" \
"${flag_lib}" \
"${flag_mem}" \
"${flag_par}" \
${flag_fc} \
${flag_bench} \
${flag_benchpp} \
${flag_blas} \
${flag_codecov} \
${flag_cfi} \
${flag_deps} \
${flag_exam} \
${flag_exampp} \
${flag_fpp} \
${flag_fresh} \
${flag_lapack} \
${flag_matlabdir} \
${flag_me} \
${flag_mod} \
${flag_nproc} \
${flag_perfprof} \
${flag_pdt} \
${flag_purity} \
${flag_test} \
${flag_ski} \
${flag_iki} \
${flag_lki} \
${flag_cki} \
${flag_rki} \
${flag_dev} \
)
verify $? "configuration with cmake"
echo >&2 ""
echo >&2 "########################################################################################%%"
echo >&2 ""
#(cd "${paramonte_bld_dir}" && $makename ${flag_j})
(cd "${paramonte_bld_dir}" && cmake --build "${paramonte_bld_dir}" ${flag_j})
verify $? "build with make"
#(cd "${paramonte_bld_dir}" && $makename install)
(cd "${paramonte_bld_dir}" && cmake --build "${paramonte_bld_dir}" --target install ${flag_j})
verify $? "installation"
#(cd "${paramonte_bld_dir}" && $makename deploy)
(cd "${paramonte_bld_dir}" && cmake --build "${paramonte_bld_dir}" --target deploy ${flag_j})
verify $? "deployment"
done
#(cd "${paramonte_bld_dir}" && $makename test && echo)
(cd "${paramonte_bld_dir}" && cmake --build "${paramonte_bld_dir}" --target test)
verify $? "testing"
#(cd "${paramonte_bld_dir}" && $makename example)
(cd "${paramonte_bld_dir}" && cmake --build "${paramonte_bld_dir}" --target example)
verify $? "examples build and run"
#(cd "${paramonte_bld_dir}" && $makename benchmark)
(cd "${paramonte_bld_dir}" && cmake --build "${paramonte_bld_dir}" --target benchmark)
verify $? "benchmarks build and run"
fi
#::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#### CODECOVE: Generate *.gcda *.gcno codecov files for the Fortran test source files
#::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [[ "${flag_codecov}" =~ .*"all".* ]]; then
# \todo
# \warning
# This version extraction relies on "version " appearing before the lcov version number.
# This must be adjusted to any potential future changes in the LCOV version string.
if command -v lcov >/dev/null 2>&1; then
lcovVersion=$(lcov -v | grep -Po '(?<=version )[^;]+')
else
unset lcovVersion
fi
unset htmlSubDir
if [ "${par}" = "mpi" ]; then
parallelismText="MPI Parallel"
htmlSubDir="mpi"
elif [[ "${par}" =~ .*"caf".* ]]; then
parallelismText="Coarray Parallel"
htmlSubDir="caf"
else
parallelismText="Serial"
htmlSubDir="serial"
fi
htmlDir="${paramonte_external_doc_out_dir}/codecov/fortran/${paramonte_version_major_fortran}/${htmlSubDir}"
htmlTitleCodeCov="ParaMonte ${paramonte_version_fortran} :: ${parallelismText} Fortran - Code Coverage Report"
if [[ ${csid} == [gG][nN][uU] ]] && command -v gcov >/dev/null 2>&1 && command -v lcov >/dev/null 2>&1; then
# gcov should be run with the current directory the same as that when you invoked the compiler.
# Otherwise it will not be able to locate the source files.
# gcov produces files called mangledname.gcov in the current directory.
# These contain the coverage information of the source file they correspond to.
# One .gcov file is produced for each source (or header) file containing code, which was compiled to produce the data files.
# The mangledname part of the output file name is usually simply the source file name, but can be something more complicated
# if the `-l` or `-p` options are given. Refer to those options for details.
#
# -o directory|file
# --object-directory directory
# --object-file file
#
# Specify either the directory containing the gcov data files, or the object path name.
# The .gcno, and .gcda data files are searched for using this option.
# If a directory is specified, the data files are in that directory and named after the input file name, without its extension.
# If a file is specified here, the data files are named after that file, without its extension.
gcovPath="$(command -v gcov)"
echo >&2 "${pmnote} GNU gcov detected at: ${gcovPath}"
echo >&2 "${pmnote} Invoking gcov to generate coverage report..."
paramonte_bld_lcov_dir="${paramonte_bld_dir}"/lcov
rm -rf "${paramonte_bld_lcov_dir}"
mkdir -p "${paramonte_bld_lcov_dir}"
lcovCombinedTraceFileName="all.tracefile.info"
lcovCombinedTraceFilePath="${paramonte_bld_lcov_dir}/${lcovCombinedTraceFileName}"
#unset branchCoverageFlag
# Add the following flag to lcov to enable branch coverage:
# branchCoverageFlag="--rc lcov_branch_coverage=1"
# "${branchCoverageFlag}"
#::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#### GCOV main source: Generate *.gcda *.gcno codecov files for the Fortran main source files
#::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if [ 0 -lt 1 ]; then # just to allow toggling in notepad++. Disable conditional to prevent example coverage report.
colections=("main" "test")
for collection in ${colections[@]}; do
if [ "${collection}" = "main" ]; then
# pm_blas is a unique file name. That is why we choose and use it.
sobjFileDir=$(find "${paramonte_bld_dir}/obj" -name pm_blas*.o)
gcovFileDir=$(find "${paramonte_bld_dir}/obj" -name pm_blas*.gcno)
elif [ "${collection}" = "test" ]; then
# main is a unique file name. That is why we choose and use it.
sobjFileDir=$(find "${paramonte_bld_dir}/test/obj" -name main*.o)
gcovFileDir=$(find "${paramonte_bld_dir}/test/obj" -name main*.gcno)
else
echo >&2 "${pmfatal} Unrecognized coverage report collection."
echo >&2 "${pmfatal} This is an internal ParaMonte build script error."
echo >&2 "${pmfatal} Please report this problem to the ParaMonte library developers on GitHub issues."
exit 1
fi
sobjFileDir=$(dirname "${sobjFileDir}")
gcovFileDir=$(dirname "${gcovFileDir}")
echo >&2 "${pmnote} sobjFileDir=${sobjFileDir}"
echo >&2 "${pmnote} gcovFileDir=${gcovFileDir}"
if [ -d "${sobjFileDir}" ] && [ -d "${gcovFileDir}" ]; then
cd "${gcovFileDir}"
for objFilePath in "${sobjFileDir}"/*.o; do
srcFileName="${objFilePath##*/}" # extract the basename.
srcFileName="${srcFileName%.o}" # extract the filename (without extension).
srcFilePath="${paramonte_src_fortran_main_dir}/${srcFileName}"
echo >&2 "${pmnote} running gcov ${srcFilePath} -o ${gcovFileDir}/${srcFileName}"
gcov "${srcFilePath}" -o "${gcovFileDir}/${srcFileName}.null" || {
echo >&2 "${pmwarn} The ParaMonte Code Coverage analysis of the ${collection} object files via GNU gcov tool failed."
echo >&2 "${pmwarn} The ParaMonte ${collection} source file: ${srcFilePath}"
echo >&2 "${pmwarn} The ParaMonte ${collection} object file: ${objFilePath}"
}
done
cd "${paramonte_bld_lcov_dir}"
lcovCurrentTraceFilePath="${paramonte_bld_lcov_dir}/lcov.${collection}.tracefile.info"
echo >&2 "${pmnote} Invoking LCOV report file for the ParaMonte Fortran ${collection} files: ${lcovCurrentTraceFilePath}"
lcov --capture --directory "${gcovFileDir}" --output-file "${lcovCurrentTraceFilePath}" && {
if [ -f "${lcovCombinedTraceFilePath}" ]; then
echo >&2 "${pmnote} Merging lcov report file with the main report file: ${lcovCombinedTraceFilePath}"
mv "${lcovCombinedTraceFilePath}" "${lcovCombinedTraceFilePath}".temp
lcov --add-tracefile "${lcovCombinedTraceFilePath}".temp -a "${lcovCurrentTraceFilePath}" -o "${lcovCombinedTraceFilePath}"
else
cp -arf "${lcovCurrentTraceFilePath}" "${lcovCombinedTraceFilePath}"
fi
} || {
echo >&2 "${pmwarn} Code Coverage report generation for the ParaMonte ${collection} source files via lcov tool failed."
#exit 1
}
else
echo >&2 "${pmwarn} Failed to detect the *.o, *.gcda, and *.gcno data files for the ParaMonte ${collection} source files."
echo >&2 "${pmwarn} The expected directory path for the object files: ${sobjFileDir}"
echo >&2 "${pmwarn} The expected directory path for the GCOV files: ${gcovFileDir}"
echo >&2 "${pmwarn} The coverage report for the ParaMonte ${collection} source file will not be included."
echo >&2 "${pmwarn} Skipping the GCOV code coverage report generation for the ${collection} files..."
fi
done
fi
####
#### Add the ParaMonte example gcov report files.
####
if [ 1 -lt 0 ]; then # just to allow toggling in notepad++. Disable conditional to prevent example coverage report.
collection="example"
for modpath in "${paramonte_bld_dir}"/pkg/example/pm_arrayCenter*/; do
for exppath in "${modpath}"/*/; do
modname=$(basename "${modpath}")
expname=$(basename "${exppath}")
#### First attempt to infer the cmake object files' directory.
sobjFileDir=$(find "${exppath}" -name main*.o)
sobjFileDir=$(dirname "${sobjFileDir}")
gcovFileDir=$(find "${exppath}" -name main*.gcno)
gcovFileDir=$(dirname "${gcovFileDir}")
if [ -d "${sobjFileDir}" ] && [ -d "${gcovFileDir}" ]; then
cd "${gcovFileDir}"
for objFilePath in "${sobjFileDir}"/*.o; do
srcFilePath="${paramonte_example_dir}/${lang}/${modname}/${expname}/main.F90"
echo >&2 "${pmnote} running gcov ${srcFilePath} --relative-only --source-prefix ${paramonte_bld_dir}/pkg/ -o ${gcovFileDir}/main.F90"
gcov "${srcFilePath}" --relative-only --source-prefix "${paramonte_bld_dir}/pkg/" -o "${gcovFileDir}/main.F90.null" || {
echo >&2 "${pmwarn} The ParaMonte Code Coverage analysis of the test object files via GNU gcov tool failed."
echo >&2 "${pmwarn} The ParaMonte test source file: ${srcFilePath}"
echo >&2 "${pmwarn} The ParaMonte test object file: ${objFilePath}"
}
done
cd "${paramonte_bld_lcov_dir}"
lcovCurrentTraceFilePath="${paramonte_bld_lcov_dir}/lcov.${collection}.${modname}.${expname}.tracefile.info"
echo >&2 "${pmnote} Invoking LCOV report file for the ParaMonte Fortran ${collection} files: ${lcovCurrentTraceFilePath}"
lcov --capture --directory "${gcovFileDir}" --output-file "${lcovCurrentTraceFilePath}" && {
if [ -f "${lcovCombinedTraceFilePath}" ]; then
echo >&2 "${pmnote} Merging lcov report file with the main report file: ${lcovCombinedTraceFilePath}"
mv "${lcovCombinedTraceFilePath}" "${lcovCombinedTraceFilePath}".temp
lcov --add-tracefile "${lcovCombinedTraceFilePath}".temp -a "${lcovCurrentTraceFilePath}" -o "${lcovCombinedTraceFilePath}"
else
cp -arf "${lcovCurrentTraceFilePath}" "${lcovCombinedTraceFilePath}"
fi
} || {
echo >&2 "${pmwarn} Code Coverage report generation failed for the ParaMonte ${collection}${modname}.${expname} source file: ${exppath}"
#exit 1
}
else
echo >&2 "${pmwarn} Failed to detect the *.o, *.gcda, and *.gcno data files for the ParaMonte test source files."
echo >&2 "${pmwarn} The expected directory path for the object files: ${sobjFileDir}"
echo >&2 "${pmwarn} The expected directory path for the GCOV files: ${gcovFileDir}"
echo >&2 "${pmwarn} The coverage report for the ParaMonte test source file will not be included."
echo >&2 "${pmwarn} Skipping the GCOV code coverage report generation for the test files..."
fi
done
done
fi
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# HTML: convert the lcov summary file to the final html report files
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
if command -v genhtml >/dev/null 2>&1; then
if [ -d "${htmlDir}" ]; then
rm -rf "${htmlDir}"
else
mkdir -p "${htmlDir}"
fi
#if ! [ -f "${lcovCombinedTraceFilePath}" ]; then
# cp "${lcovOutputFortranFilePath}" "${lcovCombinedTraceFilePath}" || {
# echo >&2 "${pmwarn} Copy action failed:"
# echo >&2 "${pmwarn} from: ${lcovOutputFortranFilePath}"
# echo >&2 "${pmwarn} to: ${lcovCombinedTraceFilePath}"
# }
#fi
genhtml "${lcovCombinedTraceFilePath}" --output-directory "${htmlDir}" --legend --title "${htmlTitleCodeCov}" && {
echo >&2 "${pmnote} The code coverage build files are stored at: ${paramonte_bld_dir}"
echo >&2 "${pmnote} The code coverage report files are stored at: ${htmlDir}"
# postprocess the html files.
# The variable `original` contains what LCOV software generates.
# The variable `modified` contains what what we intend to replace the LCOV header with.
original="<tr><td class=\"title\">LCOV - code coverage report<\/td><\/tr>"
modified="<tr><td class=\"title\">"
modified+="<a href=\"https:\/\/www.cdslab.org\/paramonte\/fortran\/${paramonte_version_major_fortran}\" target=\"_blank\">"
modified+="<img alt=\"https:\/\/www.cdslab.org\/paramonte\/fortran\/${paramonte_version_major_fortran}\" src=\"https:\/\/raw.githubusercontent.com\/cdslaborg\/paramonte\/16e8fc2abd6a4263c9f6ee25f7a9f45435443688\/img\/banner.png\"\/>"
modified+="<\/a>"
modified+="<\/td><\/tr>"
footer="<tr><td class=\"versionInfo\">"
footer+="<a href=\"https:\/\/www.cdslab.org\/paramonte\"><b>ParaMonte: Parallel Monte Carlo and Machine Learning Library<\/b><\/a> <br>"
footer+="<a href=\"https:\/\/www.cdslab.org\" target=\"_blank\"><b>The Computational Data Science Lab<\/b><\/a><br>"
footer+="© Copyright 2012 - $(date +%Y)"
footer+="<\/td><\/tr>"
shopt -s globstar
for htmlFilePath in "${htmlDir}"/**/*.html; do # Whitespace-safe and recursive
#sed -i "s/${paramonte_bld_dir//\//\\/}\/pkg\///g" "${htmlFilePath}"
sed -i "s/${original}/${modified}/g" "${htmlFilePath}"
sed -i "/<tr><td class=\"versionInfo\">/c\\${footer}" "${htmlFilePath}"
done
#scfile="${paramonte_dir}/auxil/sc.html"
#if [ -f "${scfile}" ]; then
# echo >&2
# echo >&2 "${pmnote} processing the sc file contents..."
# echo >&2
# sccontents=`cat "${paramonte_dir}/auxil/sc.html"`
# sed -e '/<\/body>/r${scfile}' "${htmlFilePath}"
#else
# echo >&2
# echo >&2 "${pmnote} ${warning} ${paramonte_dir}/auxil/sc.html is missing in your clone."
# echo >&2 "${pmnote} ${warning} This is not critical, unless you are a ParaMonte developer and"
# echo >&2 "${pmnote} ${warning} aim to publicly release this code coverage report. To obtain a "
# echo >&2 "${pmnote} ${warning} copy of the file, contact the ParaMonte lead developer at"
# echo >&2 "${pmnote} ${warning} "
# echo >&2 "${pmnote} ${warning} shahmoradi@utexas.edu"
# echo >&2
#fi
} || {
echo >&2 "${pmwarn} Code Coverage report generation via genhtml failed."
}
# "${branchCoverageFlag}" \
#--title "<a href=\"https://github.com/cdslaborg/paramonte\" target=\"_blank\">ParaMonte Fortran</a> code coverage report" \
## generate test files code coverage
#
#sobjFortranTestDir=$(find "${paramonte_bld_obj_dir}" -name test_pm_*.o)
#sobjFortranTestDir=$(dirname "${sobjFortranTestDir}")
#
#lcovFortranTestDir="${paramonte_bld_dir}"/test/lcov
#mkdir -p "${lcovFortranTestDir}"
#cd "${lcovFortranTestDir}"
#
#lcov --capture --directory "${sobjFortranTestDir}" --output-file ./paramonte.coverage.info
#
#genhtml paramonte.coverage.info --output-directory "${lcovFortranTestDir}/html"