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Release v2024.4.24
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cgohlke committed Apr 25, 2024
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21 changes: 13 additions & 8 deletions README.rst
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Expand Up @@ -8,7 +8,7 @@ measurement data and instrumentation parameters.

:Author: `Christoph Gohlke <https://www.cgohlke.com>`_
:License: BSD 3-Clause
:Version: 2024.2.20
:Version: 2024.4.24
:DOI: `10.5281/zenodo.10120021 <https://doi.org/10.5281/zenodo.10120021>`_

Quickstart
Expand All @@ -30,16 +30,21 @@ Requirements
This revision was tested with the following requirements and dependencies
(other versions may work):

- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.8, 3.12.2 (64-bit)
- `CPython <https://www.python.org>`_ 3.9.13, 3.10.11, 3.11.9, 3.12.3 (64-bit)
- `Numpy <https://pypi.org/project/numpy>`_ 1.26.4
- `Xarray <https://pypi.org/project/xarray>`_ 2024.2.0 (recommended)
- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.8.3 (optional)
- `Tifffile <https://pypi.org/project/tifffile/>`_ 2024.2.12 (optional)
- `Xarray <https://pypi.org/project/xarray>`_ 2024.3.0 (recommended)
- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.8.4 (optional)
- `Tifffile <https://pypi.org/project/tifffile/>`_ 2024.4.24 (optional)
- `Numcodecs <https://pypi.org/project/numcodecs/>`_ 0.12.1 (optional)
- `Cython <https://pypi.org/project/cython/>`_ 3.0.10 (build)

Revisions
---------

2024.4.24

- Build wheels with numpy 2.

2024.2.20

- Change definition of PtuFile.frequency (breaking).
Expand Down Expand Up @@ -106,9 +111,9 @@ Other Python modules for reading PicoQuant files are:
- `PyPTU <https://gitlab.inria.fr/jrye/pyptu>`_
- `tttrlib <https://github.com/Fluorescence-Tools/tttrlib>`_
- `picoquantio <https://github.com/tsbischof/picoquantio>`_
- `ptuparser <https://pypi.org/project/trattoria/>`_
- `ptuparser <https://pypi.org/project/ptuparser/>`_
- `phconvert <https://github.com/Photon-HDF5/phconvert/>`_
- `trattoria <https://pypi.org/project/ptuparser/>`_
- `trattoria <https://pypi.org/project/trattoria/>`_
(wrapper of `trattoria-core <https://pypi.org/project/trattoria-core/>`_ and
`tttr-toolbox <https://github.com/GCBallesteros/tttr-toolbox/tree/master/tttr-toolbox>`_)
- `napari-flim-phasor-plotter
Expand Down Expand Up @@ -170,7 +175,7 @@ Slice step sizes define binning, -1 being used to integrate along axis:

>>> ptu[:, ..., 0, ::-1]
array([[[103, ..., 38],
...
...
[ 47, ..., 30]]], dtype=uint16)

Alternatively, decode the first channel and integrate all histogram bins
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