This repository contains the scripts used for our manuscript "Multi-generational heat and warming induced epimutations contribute to phenotypic adaptation in Arabidopsis".
If you could not find the script you want, feel free to contact me: chenzixi07@outlook.com
annote_DML.pl/annote_DMR.pl: annotate the DML/DMR with the priority of different region types (Functional annotation and enrichment analysis of DMCs and DMRs in our manuscript).
bsmap2cx.pl: convert the bsmap-format result provided by GSE54292 to CX-report (Analysis of publicly available data in our manuscript).
BisSNP.call.sh: call SNPs from WGBS data (Identification of SNPs in MA samples in our manuscript).
BisSNP.filter.sh: filter SNPs from WGBS data (Identification of SNPs in MA samples in our manuscript).
annote_SNP.20220627.pl/annote_SNP.20220629.pl: annotate the SNPs (Identification of SNPs in MA samples in our manuscript).