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More flexible atom mapping

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@hannahbrucemacdonald hannahbrucemacdonald released this 21 Feb 20:27
0ad2930

Adding yaml options for atom and bond mappings for more flexibility

Separating AtomMapper function from SmallMoleculeSetProposal engine to allow for faster testing of ideas, demonstrated in atom-mapping example

Added perses-relative entry point for setup_relative_calculation.py