CHOP_CancerPanel_Analysis

Analysis and visualization of CHOP Cancer Panel Data. Code to support manuscript

Clinical Utility of Custom-designed NGS Panel Testing in Pediatric Tumors

Main Code for tables/figures:

• main.R (barcharts, oncoprints)
• tabulateRawNumbers.R -> create tables for paper
• tabulateRawNumbers_MergedTiers.R -> create tables using merged tiers for paper
• createFusionFigure_split.R -> create fusion figure
• createCNVFigure.R -> create CNV figure
• extra_details.R -> misc summaries/numbers/stats for paper
• create_supplemental_table.R -> supplemental table for paper