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chunjie-sam-liu · May 27, 2021 · a3b3185 · a3b3185
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commit a3b3185
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Showing 28 changed files with 407 additions and 146 deletions.
diff --git a/gsca-angular/src/app/modules/drug/ctrp/ctrp.component.html b/gsca-angular/src/app/modules/drug/ctrp/ctrp.component.html
@@ -24,7 +24,15 @@
                 {{ element[column] }}
               </ng-template>
               <ng-template #plain>
-                {{ column === 'drug' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'drug'
+                    ? element[column]
+                    : column !== 'fdr'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/drug/gdsc/gdsc.component.html b/gsca-angular/src/app/modules/drug/gdsc/gdsc.component.html
@@ -25,7 +25,15 @@
                 {{ element[column] }}
               </ng-template>
               <ng-template #plain>
-                {{ column === 'drug' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'drug'
+                    ? element[column]
+                    : column !== 'fdr'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/gene-set/gene-set.component.html b/gsca-angular/src/app/modules/expression/gene-set/gene-set.component.html
@@ -27,7 +27,13 @@
                   {{ element[column] }}
                 </ng-template>
                 <ng-template #plain>
-                  {{ element[column] | number: '1.2-2' }}
+                  {{
+                    column !== 'pval'
+                      ? (element[column] | number: '1.2-2')
+                      : element[column] < 0.01
+                      ? element[column].toExponential(2)
+                      : (element[column] | number: '1.2-2')
+                  }}
                 </ng-template>
               </td>
             </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/gsea/gsea.component.html b/gsca-angular/src/app/modules/expression/gsea/gsea.component.html
@@ -26,7 +26,13 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ element[column] | number: '1.2-2' }}
+                {{
+                  column !== 'pval' && column !== 'padj'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/gsva-rppa/gsva-rppa.component.html b/gsca-angular/src/app/modules/expression/gsva-rppa/gsva-rppa.component.html
@@ -5,7 +5,8 @@
       <mat-card fxFlex appMaterialElevation defaultElevation="4" raisedElevation="4">
         <mat-card-header>
           <mat-card-title
-            >Table: detailed information of the difference of pathway activity between high and low GSVA score groups in the selected cancers</mat-card-title
+            >Table: detailed information of the difference of pathway activity between high and low GSVA score groups in the selected
+            cancers</mat-card-title
           >
         </mat-card-header>
         <ng-container *ngIf="!dataSourceGSVARPPALoading; else loading"></ng-container>
@@ -28,7 +29,15 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'cancertype' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'cancertype'
+                    ? element[column]
+                    : column !== 'pval' && column !== 'fdr'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>
@@ -70,7 +79,9 @@
     <ng-container *ngIf="showGSVARPPAImage">
       <mat-card fxFlex appMaterialElevation defaultElevation="4" raisedElevation="4">
         <mat-card-header>
-          <mat-card-title>Summary figure: association between GSVA score and activity of cancer related pathways in selected cancers</mat-card-title>
+          <mat-card-title
+            >Summary figure: association between GSVA score and activity of cancer related pathways in selected cancers</mat-card-title
+          >
         </mat-card-header>
         <mat-card-content>
           <ng-container *ngIf="!GSVARPPAImageLoading; else loading">

diff --git a/gsca-angular/src/app/modules/expression/gsva-stage/gsva-stage.component.html b/gsca-angular/src/app/modules/expression/gsva-stage/gsva-stage.component.html
@@ -33,7 +33,13 @@
                   <!-- </button> -->
                 </ng-template>
                 <ng-template #plain>
-                  {{ element[column] | number: '1.2-2' }}
+                  {{
+                    column !== 'diff_p' && column !== 'trend_p'
+                      ? (element[column] | number: '1.2-2')
+                      : element[column] < 0.01
+                      ? element[column].toExponential(2)
+                      : (element[column] | number: '1.2-2')
+                  }}
                 </ng-template>
               </td>
             </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/gsva-subtype/gsva-subtype.component.html b/gsca-angular/src/app/modules/expression/gsva-subtype/gsva-subtype.component.html
@@ -40,7 +40,7 @@
                   <!-- </button> -->
                 </ng-template>
                 <ng-template #plain>
-                  {{ element[column] | number: '1.2-2' }}
+                  {{ element[column] < 0.01 ? element[column].toExponential(2) : (element[column] | number: '1.2-2') }}
                 </ng-template>
               </td>
             </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/gsva-survival/gsva-survival.component.html b/gsca-angular/src/app/modules/expression/gsva-survival/gsva-survival.component.html
@@ -27,7 +27,15 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'sur_type' || column === 'higher_risk_of_death' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'sur_type' || column === 'higher_risk_of_death'
+                    ? element[column]
+                    : column !== 'logrankp'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/ppar/ppar.component.html b/gsca-angular/src/app/modules/expression/ppar/ppar.component.html
@@ -27,7 +27,13 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'fdr' || column === 'diff' ? (element[column] | number: '1.2-2') : element[column] }}
+                {{
+                  column !== 'fdr'
+                    ? element[column]
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>
@@ -69,7 +75,10 @@
     <ng-container *ngIf="showRPPAImage">
       <mat-card fxFlex appMaterialElevation defaultElevation="4" raisedElevation="4">
         <mat-card-header>
-          <mat-card-title>Summary figure: percentage of cancers in which specific gene's mRNA expression has pertential effect on pathway activity</mat-card-title>
+          <mat-card-title
+            >Summary figure: percentage of cancers in which specific gene's mRNA expression has pertential effect on pathway
+            activity</mat-card-title
+          >
         </mat-card-header>
         <mat-card-content>
           <ng-container *ngIf="!RPPAImageLoading; else loading">

diff --git a/gsca-angular/src/app/modules/expression/stage/stage.component.html b/gsca-angular/src/app/modules/expression/stage/stage.component.html
@@ -27,7 +27,13 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'fdr' || column === 'pval' ? (element[column] | number: '1.2-2') : element[column] }}
+                {{
+                  column !== 'fdr' && column !== 'pval'
+                    ? element[column]
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/subtype/subtype.component.html b/gsca-angular/src/app/modules/expression/subtype/subtype.component.html
@@ -27,7 +27,13 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'cancertype' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'cancertype'
+                    ? element[column]
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/expression/survival/survival.component.html b/gsca-angular/src/app/modules/expression/survival/survival.component.html
@@ -31,6 +31,10 @@
                 {{
                   column === 'higher_risk_of_death' || column === 'cancertype' || column === 'sur_type'
                     ? element[column]
+                    : column !== 'logrankp' && column !== 'coxp_categorical'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
                     : (element[column] | number: '1.2-2')
                 }}
               </ng-template>

diff --git a/gsca-angular/src/app/modules/immune/immune-cnv-gsva/immune-cnv-gsva.component.html b/gsca-angular/src/app/modules/immune/immune-cnv-gsva/immune-cnv-gsva.component.html
@@ -1,14 +1,20 @@
 <div fxLayout="column" fxLayoutGap="10px" fxFill>
-  <app-doc-immune-cnv-gsva fxLayout="row" fxLayout.lt-lg="column" fxLayoutGap="10px" fxLayoutWrap fxLayoutAlign="center"></app-doc-immune-cnv-gsva>
+  <app-doc-immune-cnv-gsva
+    fxLayout="row"
+    fxLayout.lt-lg="column"
+    fxLayoutGap="10px"
+    fxLayoutWrap
+    fxLayoutAlign="center"
+  ></app-doc-immune-cnv-gsva>
   <div fxLayout="row" fxLayout.lt-lg="column" fxLayoutGap="10px" fxLayoutWrap fxLayoutAlign="center">
     <ng-container *ngIf="showImmGenesetCnvCorTable">
       <mat-card fxFlex appMaterialElevation defaultElevation="4" raisedElevation="4">
         <mat-card-header>
           <mat-card-title>Table: difference of immune infiltrates between gene set CNV groups in the specific cancers</mat-card-title>
         </mat-card-header>
-    
+
         <ng-container *ngIf="!dataSourceImmGenesetCnvCorLoading; else loading"></ng-container>
-    
+
         <mat-form-field>
           <input matInput placeholder="Search gene symbol" (keyup)="applyFilter($event)" #inputImmGenesetCnvCor />
           <button mat-icon-button color="warn" matPrefix>
@@ -27,11 +33,17 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'cancertype' || column === 'celltype' || column === 'method_short'? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column !== 'p_value' && column !== 'fdr'
+                    ? element[column]
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>
-    
+
           <ng-container matColumnDef="expandedDetail">
             <td mat-cell *matCellDef="let element" [attr.colSpan]="displayedColumnsImmGenesetCnvCor.length">
               <div class="example-element-detail" [@detailExpand]="triggerDetail(element)">
@@ -72,7 +84,15 @@
         </mat-card-header>
         <mat-card-content>
           <ng-container *ngIf="!immGenesetCnvCorImageLoading; else loading">
-            <a mat-button mat-mini-fab color="warn" arial-label="download" class="download-button" [href]="immGenesetCnvCorPdfURL" target="_blank">
+            <a
+              mat-button
+              mat-mini-fab
+              color="warn"
+              arial-label="download"
+              class="download-button"
+              [href]="immGenesetCnvCorPdfURL"
+              target="_blank"
+            >
               <mat-icon>cloud_download</mat-icon></a
             >
             <img [src]="immGenesetCnvCorImage" alt="immGenesetCnvCorImage" loading="lazy" />
@@ -85,4 +105,4 @@
     <mat-progress-bar mode="query" color="warn"></mat-progress-bar>
   </ng-template>
   <ng-template #empty></ng-template>
-</div>
+</div>
diff --git a/gsca-angular/src/app/modules/immune/immune-cnv/immune-cnv.component.html b/gsca-angular/src/app/modules/immune/immune-cnv/immune-cnv.component.html
@@ -28,7 +28,15 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'cell_type' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'cell_type'
+                    ? element[column]
+                    : column !== 'p_value' && column !== 'fdr'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>

diff --git a/gsca-angular/src/app/modules/immune/immune-expr/immune-expr.component.html b/gsca-angular/src/app/modules/immune/immune-expr/immune-expr.component.html
@@ -28,7 +28,15 @@
                 </button>
               </ng-template>
               <ng-template #plain>
-                {{ column === 'cell_type' ? element[column] : (element[column] | number: '1.2-2') }}
+                {{
+                  column === 'cell_type'
+                    ? element[column]
+                    : column !== 'p_value' && column !== 'fdr'
+                    ? (element[column] | number: '1.2-2')
+                    : element[column] < 0.01
+                    ? element[column].toExponential(2)
+                    : (element[column] | number: '1.2-2')
+                }}
               </ng-template>
             </td>
           </ng-container>