batch module renamed to pipeline

cicwi · Apr 26, 2019 · cd29b1f · cd29b1f
1 parent 7ea7345
commit cd29b1f
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diff --git a/doc_sources/flexcalc.rst b/doc_sources/flexcalc.rst
@@ -24,7 +24,7 @@ flexcalc.analyze module
 flexcalc.batch module
 ---------------------
 
-.. automodule:: flexcalc.batch
+.. automodule:: flexcalc.pipeline
     :members:
     :undoc-members:
     :show-inheritance:

diff --git a/docs/_modules/flexcalc/batch.html → docs/_modules/flexcalc/pipeline.html b/docs/_modules/flexcalc/batch.html → docs/_modules/flexcalc/pipeline.html
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -144,7 +144,7 @@
 
   <h1>All modules for which code is available</h1>
 <ul><li><a href="flexcalc/analyze.html">flexcalc.analyze</a></li>
-<li><a href="flexcalc/batch.html">flexcalc.batch</a></li>
+<li><a href="flexcalc/pipeline.html">flexcalc.pipeline</a></li>
 <li><a href="flexcalc/process.html">flexcalc.process</a></li>
 </ul>
 

diff --git a/docs/_sources/flexcalc.rst.txt b/docs/_sources/flexcalc.rst.txt
@@ -24,7 +24,7 @@ flexcalc.analyze module
 flexcalc.batch module
 ---------------------
 
-.. automodule:: flexcalc.batch
+.. automodule:: flexcalc.pipeline
     :members:
     :undoc-members:
     :show-inheritance:

diff --git a/docs/doctrees/environment.pickle b/docs/doctrees/environment.pickle
diff --git a/docs/doctrees/flexcalc.doctree b/docs/doctrees/flexcalc.doctree
diff --git a/docs/flexcalc.html b/docs/flexcalc.html
diff --git a/docs/genindex.html b/docs/genindex.html
diff --git a/docs/index.html b/docs/index.html
@@ -164,7 +164,7 @@ <h1>Welcome to the documentation of flexcalc!<a class="headerlink" href="#welcom
 <li class="toctree-l1"><a class="reference internal" href="flexcalc.html">Modules</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.process">flexcalc.process module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.analyze">flexcalc.analyze module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.batch">flexcalc.batch module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.pipeline">flexcalc.batch module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc">Module contents</a></li>
 </ul>
 </li>

diff --git a/docs/modules.html b/docs/modules.html
@@ -153,7 +153,7 @@ <h1>flexcalc<a class="headerlink" href="#flexcalc" title="Permalink to this head
 <li class="toctree-l1"><a class="reference internal" href="flexcalc.html">Modules</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.process">flexcalc.process module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.analyze">flexcalc.analyze module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.batch">flexcalc.batch module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc.pipeline">flexcalc.batch module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="flexcalc.html#module-flexcalc">Module contents</a></li>
 </ul>
 </li>

diff --git a/docs/objects.inv b/docs/objects.inv
diff --git a/docs/py-modindex.html b/docs/py-modindex.html
@@ -170,7 +170,7 @@ <h1>Python Module Index</h1>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;
-       <a href="flexcalc.html#module-flexcalc.batch"><code class="xref">flexcalc.batch</code></a></td><td>
+       <a href="flexcalc.html#module-flexcalc.pipeline"><code class="xref">flexcalc.pipeline</code></a></td><td>
        <em></em></td></tr>
      <tr class="cg-1">
        <td></td>

diff --git a/docs/searchindex.js b/docs/searchindex.js
diff --git a/examples/ex5_batch_tiling.py b/examples/ex5_batch_tiling.py
@@ -7,12 +7,12 @@
 """
 #%% Imports
 
-from flexcalc import batch
+from flexcalc import pipeline
 #from numpy import linspace
 
 #%% Initialize and schedule (1):
 
-lola = batch.scheduler('/export/scratch3/kostenko/scratch/', clean_scratch = True)
+lola = pipeline.scheduler('/export/scratch3/kostenko/scratch/', clean_scratch = True)
 
 # Load data:
 path = '/ufs/ciacc/flexbox/tiling/t*'
@@ -57,11 +57,11 @@
 
 #%% Restore node tree after crash and repeat:
 
-masha = batch.scheduler('/export/scratch3/kostenko/scratch/', clean_scratch = False)
+masha = pipeline.scheduler('/export/scratch3/kostenko/scratch/', clean_scratch = False)
 masha.restore_nodes()
 masha.draw_nodes()
 masha.report()
 
 masha.run()
 
-#masha.cleanup()
+#masha.cleanup()
diff --git a/examples/ex6_batch_timelapce.py b/examples/ex6_batch_timelapce.py
@@ -7,13 +7,13 @@
 """
 #%% Imports
 
-from flexcalc import batch
+from flexcalc import pipeline
 from flexcalc import process
 from numpy import linspace
 
 #%% Initialize and schedule (1):
 
-lola = batch.scheduler('/export/scratch3/kostenko/scratch/', clean_scratch = True)
+lola = pipeline.scheduler('/export/scratch3/kostenko/scratch/', clean_scratch = True)
 
 # Load data:
 path = '/ufs/ciacc/flexbox/timelapce/day*'
@@ -59,4 +59,4 @@
 
 #%% Runtime
 
-lola.run()
+lola.run()
diff --git a/flexcalc/__init__.py b/flexcalc/__init__.py
@@ -1,4 +1,4 @@
-from . import batch
+from . import pipeline
 from . import process
 from . import analyze
 

diff --git a/flexcalc/batch.py → flexcalc/pipeline.py b/flexcalc/batch.py → flexcalc/pipeline.py