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Change: --length-range default change from 50:500 to 30:999999.
Feature: HardClipEnd: new process to hard remove the last N bases.
Change: names in processing order (--order -O) changed.
Feature: PCRDedup: remove PCR duplicates from fastq files. The entire paired sequence is compared and hashed. This method require large memory because it stores hashes of reads. To enable, use --pcr-dedup.
Feature: processing stats are recorded in the json file.
Fix: polyX_tail_scan algorithm now is more precise, and tailing Ns also count.