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From single-cell modeling to large-scale network dynamics with NEST Simulator

From single-cell modeling to large-scale network dynamics with NEST Simulator

Getting access to cloud computing resources

  • Register/Create JSC account at https://judoor.fz-juelich.de - Video-Howto (1:10)

    • Click on "Register"
    • Enter your email address
    • Click on "Send confirmation mail..."
    • Open the confirmation email in your email program
    • Click the confirmation link

  • Join the training project training2422

  • Please be patient

    • This takes as long as the PI needs to respond!
    • The PI has to accept your join-request first
    • After acceptance
      • project will be listed in section "Projects"
      • systems will be listed in section "Systems"

  • Sign usage agreement online - Video-Howto (1:13)

    • Login to https://judoor.fz-juelich.de
    • Scroll to section "Systems"
    • Click on "You need to sign the usage agreement to access this system"
    • Sign the usage agreement online

  • Please be patient

    • This may take up to 10 minutes!
    • Your HPC accounts will now be created on the desired systems.
    • Shortly after your HPC accounts are prepared you will see
      • "jupyter-jsc" in the section "Connected Services"

  • Login at https://jupyter-jsc.fz-juelich.de - Video-Howto (1:34)

    • Click on "Login"
    • Login with your new JSC account
    • If this is your first login
      • click on "Register"
      • agree to the terms of service
      • click the link in the confirmation mail

  • Start the server

    • Start a new Jupyter server by clicking the + button.
    • Select JupyterLab 4.2 on the JUSUF system. Select the LoginNode partition. Use the training2422 project.
    • Once the server has started, open the notebook that you want to work on. Then, in the top right, click the text "Python 3 (ipykernel)" to select our custom kernel that has NEST and other tools installed; it is called ocns_2024_nest_nestml_kernel.

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