{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":791659950,"defaultBranch":"main","name":"tools-iuc","ownerLogin":"clsiguret","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2024-04-25T06:04:22.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/37694850?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1726736251.0","currentOid":""},"activityList":{"items":[{"before":"6b17bcf7af17da2ae6cdd68006debbec38cd333c","after":"f7530c8b59e125faadef1093ecad7ccab150d444","ref":"refs/heads/staramr_add","pushedAt":"2024-09-26T08:58:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Changed output label","shortMessageHtmlLink":"Changed output label"}},{"before":"db4da6a5872a0dd84582096876f3917b45c65539","after":"6b17bcf7af17da2ae6cdd68006debbec38cd333c","ref":"refs/heads/staramr_add","pushedAt":"2024-09-26T08:03:37.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Functional test 10","shortMessageHtmlLink":"Functional test 10"}},{"before":"ee0f2057b488c839379417375461d278b46ec015","after":"db4da6a5872a0dd84582096876f3917b45c65539","ref":"refs/heads/staramr_add","pushedAt":"2024-09-25T14:00:21.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Functional test 1","shortMessageHtmlLink":"Functional test 1"}},{"before":"f0ab9d7a0cf1dbb7359a5e2679275e420e4f2703","after":"242d0c07083f981bfe5247f1c2efa28b5ac6338f","ref":"refs/heads/patch-1","pushedAt":"2024-09-24T07:42:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Corrected tests","shortMessageHtmlLink":"Corrected tests"}},{"before":"303002db06287fb25306020c4391626842f52162","after":"f0ab9d7a0cf1dbb7359a5e2679275e420e4f2703","ref":"refs/heads/patch-1","pushedAt":"2024-09-23T12:01:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Update ToolDistillator version in macro.xml","shortMessageHtmlLink":"Update ToolDistillator version in macro.xml"}},{"before":"c49866acb937a340960c03a05b49bb9155cdb4fc","after":"ee0f2057b488c839379417375461d278b46ec015","ref":"refs/heads/staramr_add","pushedAt":"2024-09-19T12:00:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Merge branch 'staramr_add' of github.com:clsiguret/tools-iuc into staramr_add","shortMessageHtmlLink":"Merge branch 'staramr_add' of github.com:clsiguret/tools-iuc into sta…"}},{"before":"0c6c58f93796c8d9c3f42d6b8635040c5c2f49dc","after":"c49866acb937a340960c03a05b49bb9155cdb4fc","ref":"refs/heads/staramr_add","pushedAt":"2024-09-19T08:58:23.000Z","pushType":"push","commitsCount":425,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Merge branch 'galaxyproject:main' into staramr_add","shortMessageHtmlLink":"Merge branch 'galaxyproject:main' into staramr_add"}},{"before":"e7eed8294ff51dbbd819ace7184b2a555677d770","after":"4babe88f84d0853e3a074fac19b62b457a59251b","ref":"refs/heads/main","pushedAt":"2024-09-19T08:58:02.000Z","pushType":"push","commitsCount":424,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Merge pull request #6339 from martenson/ucsc_netfilter\n\nadd ucsc netfilter tool","shortMessageHtmlLink":"Merge pull request galaxyproject#6339 from martenson/ucsc_netfilter"}},{"before":null,"after":"0c6c58f93796c8d9c3f42d6b8635040c5c2f49dc","ref":"refs/heads/staramr_add","pushedAt":"2024-09-19T08:57:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"add StarAMR wrapper and creator list from phac-nml","shortMessageHtmlLink":"add StarAMR wrapper and creator list from phac-nml"}},{"before":"23cabc09fd10b11707ec814c028d72314833eaa5","after":null,"ref":"refs/heads/qiime_core-biotools","pushedAt":"2024-07-25T07:57:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"}},{"before":"1cfa193b267b6a004319c2e31018c17e2183ebb9","after":null,"ref":"refs/heads/tooldistillator-update","pushedAt":"2024-07-03T12:24:08.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"}},{"before":null,"after":"1cfa193b267b6a004319c2e31018c17e2183ebb9","ref":"refs/heads/tooldistillator-update","pushedAt":"2024-07-03T09:50:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Added features for ToolDistillator v0.9","shortMessageHtmlLink":"Added features for ToolDistillator v0.9"}},{"before":"e1af25e42839c772b023f700210013658e42dc15","after":"e7eed8294ff51dbbd819ace7184b2a555677d770","ref":"refs/heads/main","pushedAt":"2024-07-02T08:33:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Updating tools/pbmm2 from version 1.13.1 to 1.14.99 (#6092)\n\nCo-authored-by: planemo-autoupdate ","shortMessageHtmlLink":"Updating tools/pbmm2 from version 1.13.1 to 1.14.99 (galaxyproject#6092)"}},{"before":"3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5","after":"e1af25e42839c772b023f700210013658e42dc15","ref":"refs/heads/main","pushedAt":"2024-07-01T07:05:16.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Improve the Falco wrapper (#6116)\n\n* Improve the Falco wrapper\r\n\r\n- Mention FastQC in the description to make the tool findable when\r\n searching for the original\r\n- Add information about advantages and current limitations compared to\r\n FastQC to help section\r\n- Do not produce the results summary file by default, but only on demand\r\n- Simplify symlinking\r\n\r\n* Fix wrongly negated output filter","shortMessageHtmlLink":"Improve the Falco wrapper (galaxyproject#6116)"}},{"before":"b1797a2dee3977cdf40d3cf413ab9ec1e0cb3f26","after":"3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5","ref":"refs/heads/main","pushedAt":"2024-06-24T08:22:52.000Z","pushType":"push","commitsCount":77,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"rename all config dirs to avoid conflicts when running parallel tasks… (#6041)\n\n* rename all config dirs to avoid conflicts when running parallel tasks in galaxy workflow\r\n\r\n* upgrade tool version suffix\r\n\r\n* Update macros.xml\r\n\r\n* Update dimet_timecourse_analysis.xml\r\n\r\n* Update dimet_pca_plot.xml\r\n\r\n* Update dimet_pca_analysis.xml\r\n\r\n* Update dimet_pca_analysis.xml\r\n\r\n* Update dimet_metabologram.xml\r\n\r\n* Update dimet_metabologram.xml\r\n\r\n* Update dimet_isotopologues_plot.xml\r\n\r\n* Update dimet_isotopologues_plot.xml\r\n\r\n* Update dimet_enrichment_plot.xml\r\n\r\n* Update dimet_differential_multigroup_analysis.xml\r\n\r\n* Update dimet_differential_multigroup_analysis.xml\r\n\r\n* Update dimet_differential_analysis.xml\r\n\r\n* Update dimet_bivariate_analysis.xml\r\n\r\n* Update dimet_abundance_plot.xml\r\n\r\n* replace __new_file_path__ by temp directory in job working directory\r\n\r\n* replace back temp by __new_file_path__ directory in job working directory\r\n\r\n* replace back temp by __new_file_path__ directory in job working directory\r\n\r\n* put back the ./config dir in macros.xml, remoce -cp option in hydra args and replace ++hydra.run.dir=XXXXX by ++hydra.run.dir=.\r\n\r\n---------\r\n\r\nCo-authored-by: M Bernt ","shortMessageHtmlLink":"rename all config dirs to avoid conflicts when running parallel tasks… ("}},{"before":"28ab6b2c409c13a830262a1674aa01865a39aee3","after":"23cabc09fd10b11707ec814c028d72314833eaa5","ref":"refs/heads/qiime_core-biotools","pushedAt":"2024-05-30T07:58:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Fix linting","shortMessageHtmlLink":"Fix linting"}},{"before":"5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d","after":"b1797a2dee3977cdf40d3cf413ab9ec1e0cb3f26","ref":"refs/heads/main","pushedAt":"2024-05-30T05:46:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Merge pull request #6038 from clsiguret/ncbi_fcs_gx-biotools\n\nAdd bio.tools for ncbi_fcs_gx","shortMessageHtmlLink":"Merge pull request galaxyproject#6038 from clsiguret/ncbi_fcs_gx-biot…"}},{"before":"12963a30ef5ba90e55ccec66447954d74eaab747","after":null,"ref":"refs/heads/ncbi_fcs_gx-biotools","pushedAt":"2024-05-30T05:45:41.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"}},{"before":null,"after":"28ab6b2c409c13a830262a1674aa01865a39aee3","ref":"refs/heads/qiime_core-biotools","pushedAt":"2024-05-29T14:09:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Add bio.tools to qiime_core","shortMessageHtmlLink":"Add bio.tools to qiime_core"}},{"before":null,"after":"12963a30ef5ba90e55ccec66447954d74eaab747","ref":"refs/heads/ncbi_fcs_gx-biotools","pushedAt":"2024-05-29T13:50:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Add bio.tools for ncbi_fcs_gx","shortMessageHtmlLink":"Add bio.tools for ncbi_fcs_gx"}},{"before":"13aa776596c927adff29d936740ac80f0e37375d","after":"5ae40d4f44fc2716f3c37a9fad2077a0d0230a6d","ref":"refs/heads/main","pushedAt":"2024-05-29T13:39:10.000Z","pushType":"push","commitsCount":14,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"update VirHEAT to v0.7, add -a and -s (#6026)\n\n* update to v0.7, add -a and -s\r\n\r\n* use column_names instead of text\r\n\r\n* Update virheat.xml\r\n\r\n---------\r\n\r\nCo-authored-by: Björn Grüning ","shortMessageHtmlLink":"update VirHEAT to v0.7, add -a and -s (galaxyproject#6026)"}},{"before":"0ce0bc53858ca99fdf5f90187cae03d34959ec53","after":null,"ref":"refs/heads/tooldistillator_update","pushedAt":"2024-05-24T12:26:42.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"}},{"before":"a190a4dd655ec05b529372f45e731b565622a2a2","after":null,"ref":"refs/heads/add_tool_in_iuc","pushedAt":"2024-05-24T12:07:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"}},{"before":null,"after":"0ce0bc53858ca99fdf5f90187cae03d34959ec53","ref":"refs/heads/tooldistillator_update","pushedAt":"2024-05-22T14:07:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Add AMRFinderPlus files for the test part","shortMessageHtmlLink":"Add AMRFinderPlus files for the test part"}},{"before":"8f659e3524ff3fbf70ce9f4090e3fe8a49048b29","after":"13aa776596c927adff29d936740ac80f0e37375d","ref":"refs/heads/main","pushedAt":"2024-05-22T12:54:00.000Z","pushType":"push","commitsCount":51,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Updated the input dataypes for pairtools parse + minor changes (#6020)\n\n* Updated the input dataypes for pairtools parse + minor changes\r\n\r\n* Version Bump\r\n\r\n* Minor change\r\n\r\nCo-authored-by: Björn Grüning \r\n\r\n---------\r\n\r\nCo-authored-by: Björn Grüning ","shortMessageHtmlLink":"Updated the input dataypes for pairtools parse + minor changes (galax…"}},{"before":"877a83aede1a184aa62ad3a6ced469281d32ba61","after":"a190a4dd655ec05b529372f45e731b565622a2a2","ref":"refs/heads/add_tool_in_iuc","pushedAt":"2024-04-26T13:54:18.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Change tests in XML files + remove None and str term","shortMessageHtmlLink":"Change tests in XML files + remove None and str term"}},{"before":"b8779475e6bbf7e680df427944d044f5e360e88f","after":"877a83aede1a184aa62ad3a6ced469281d32ba61","ref":"refs/heads/add_tool_in_iuc","pushedAt":"2024-04-26T12:33:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Apply suggestions from code review\n\nCo-authored-by: Björn Grüning ","shortMessageHtmlLink":"Apply suggestions from code review"}},{"before":"39d39fcd7ae99274aa270e2c3ec1cfe04d3bc79b","after":"b8779475e6bbf7e680df427944d044f5e360e88f","ref":"refs/heads/add_tool_in_iuc","pushedAt":"2024-04-26T08:48:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Remove test-data html for MultiQC because the files were too large and not used by test","shortMessageHtmlLink":"Remove test-data html for MultiQC because the files were too large an…"}},{"before":"abf6da7e3ecae2f3d0929bdbabfd0912cf1c448a","after":"39d39fcd7ae99274aa270e2c3ec1cfe04d3bc79b","ref":"refs/heads/add_tool_in_iuc","pushedAt":"2024-04-26T08:28:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Change test-data and tests for Kraken2 because the files were too large","shortMessageHtmlLink":"Change test-data and tests for Kraken2 because the files were too large"}},{"before":"e72ec953f26fe8a69283e319675fc143da1dd776","after":"abf6da7e3ecae2f3d0929bdbabfd0912cf1c448a","ref":"refs/heads/add_tool_in_iuc","pushedAt":"2024-04-26T07:04:01.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"clsiguret","name":"Clea Siguret","path":"/clsiguret","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37694850?s=80&v=4"},"commit":{"message":"Change test-data and tests for Bakta because the files were too large","shortMessageHtmlLink":"Change test-data and tests for Bakta because the files were too large"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yNlQwODo1ODowOC4wMDAwMDBazwAAAATBP6sQ","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNC0yNlQwNzowNDowMS4wMDAwMDBazwAAAAQ64IY2"}},"title":"Activity · clsiguret/tools-iuc"}