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A tool for identifiying the G-domain in PDB files that contain MHC.

Dependencies

  • pymol==3.0.0
  • biopython==1.84

Running the script

The script has its own reference pdb file. You only have to provide the pdb file that needs to be identified. One can insert multiple pdb files:

scripts/find_gdomain pdb_path_1 pdb_path_2 ...

or:

scripts/find_gdomain /data/pdb_files/*.pdb

output:

pdb_path_1 M2-M180
pdb_path_2 A1-A179
...

Each row corresponds to an unknown PDB file. The first column identifies the input file. The second column indicates the residues of the G-domain. (chain ids + residue numbers)