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Merge pull request #37 from chrisjonesBSU/fix-pairs #213

Merge pull request #37 from chrisjonesBSU/fix-pairs

Merge pull request #37 from chrisjonesBSU/fix-pairs #213

Workflow file for this run

name: pytest
on:
push:
branches: [ master ]
paths:
- '.github/workflows/pytest.yml'
- 'environment-cpu.yml'
- 'msibi/**'
pull_request:
branches: [ master ]
paths:
- 'msibi/**'
- 'environment-cpu.yml'
- '.github/workflows/pytest.yml'
# Allows workflow to be manually triggered
workflow_dispatch:
jobs:
pytest:
runs-on: ubuntu-latest
steps:
- name: Check out repository
uses: actions/checkout@v2
- name: Build environment
uses: conda-incubator/setup-miniconda@v2
with:
environment-file: environment-cpu.yml
miniforge-variant: Mambaforge
miniforge-version: 4.9.2-4
use-mamba: true
- name: Install package
shell: bash -l {0}
run: pip install .
- name: Run pytest with coverage report
shell: bash -l {0}
run: python -m pytest --cov=./ --cov-report=xml -v
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v1
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml