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conda_env.yml
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name: ivar-inpipe
channels:
- conda-forge
- bioconda
- defaults
- gwforg
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- alsa-lib=1.2.3=h516909a_0
- bedtools=2.29.2=hc088bd4_0
- biopython=1.74=py37h516909a_0
- bwa=0.7.17=hed695b0_7
- bz2file=0.98=py_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.11.0=h470a237_1
- ca-certificates=2020.12.5=ha878542_0
- cairo=1.16.0=h7979940_1007
- certifi=2020.12.5=py37h89c1867_1
- click=7.1.2=pyh9f0ad1d_0
- click-plugins=1.1.1=py_0
- curl=7.71.1=he644dc0_8
- cutadapt=2.6=py37h516909a_0
- dnaio=0.3=py37h14c3975_1
- fastqc=0.11.9=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.1=h736d332_1003
- freetype=2.10.4=h7ca028e_0
- gettext=0.19.8.1=h0b5b191_1005
- giflib=5.2.1=h36c2ea0_2
- graphite2=1.3.13=h58526e2_1001
- gwf=1.7.2=py_0
- harfbuzz=2.7.4=h5cf4720_0
- htslib=1.10.2=hd3b49d5_1
- icu=68.1=h58526e2_0
- ivar=1.3=h089eab3_0
- jpeg=9d=h36c2ea0_0
- krb5=1.17.2=h926e7f8_0
- lcms2=2.11=hcbb858e_1
- ld_impl_linux-64=2.35.1=hea4e1c9_1
- libblas=3.9.0=7_openblas
- libcblas=3.9.0=7_openblas
- libcurl=7.71.1=hcdd3856_8
- libdeflate=1.6=h516909a_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h5dbcf3e_17
- libgfortran-ng=9.3.0=he4bcb1c_17
- libgfortran5=9.3.0=he4bcb1c_17
- libglib=2.66.4=h164308a_1
- libgomp=9.3.0=h5dbcf3e_17
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=7_openblas
- libnghttp2=1.41.0=hab1572f_1
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libssh2=1.9.0=hab1572f_5
- libstdcxx-ng=9.3.0=h2ae2ef3_17
- libtiff=4.2.0=hdc55705_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.1.0=h36c2ea0_3
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.10=h72842e0_3
- lz4-c=1.9.3=h9c3ff4c_0
- ncurses=6.2=h58526e2_4
- numpy=1.19.5=py37haa41c4c_1
- openjdk=11.0.8=hacce0ff_0
- openssl=1.1.1i=h7f98852_0
- pandas
- pcre=8.44=he1b5a44_0
- perl=5.32.0=h36c2ea0_0
- pigz=2.3.4=hed695b0_1
- pip=20.3.3=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- python=3.7.9=hffdb5ce_0_cpython
- python_abi=3.7=1_cp37m
- readline=8.0=he28a2e2_2
- samtools=1.10=h2e538c0_3
- setuptools=49.6.0=py37h89c1867_3
- sqlite=3.34.0=h74cdb3f_0
- tk=8.6.10=h21135ba_1
- trim-galore=0.6.6=0
- wheel=0.36.2=pyhd3deb0d_0
- xopen=0.7.3=py_0
- xorg-fixesproto=5.0=h14c3975_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.12=h516909a_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxfixes=5.0.3=h516909a_1004
- xorg-libxi=1.7.10=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxtst=1.2.3=h516909a_1002
- xorg-recordproto=1.14.2=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1010
- zstd=1.4.8=ha95c52a_1