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@combat-sars-cov-2

combat-sars-cov-2

Comprehensive Analytical ToolKit for SARS-COV-2 Research (and related projects)

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  1. workbench-deploy workbench-deploy Public

    IRIDA and Galaxy deployment manifest definitions and scripts

    HTML 1 1

  2. irida-plugin-sars-cov-2-illumina irida-plugin-sars-cov-2-illumina Public

    Java

  3. irida-plugin-sars-cov-2-nanopore irida-plugin-sars-cov-2-nanopore Public

    The nanopore workflow plugin for sars-cov2

    Java

  4. irida-uploader irida-uploader Public

    Forked from phac-nml/irida-uploader

    Sequence file uploader for IRIDA

    Python

  5. irida irida Public

    Forked from phac-nml/irida

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java

  6. workbench-cli workbench-cli Public

    Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier …

    Python 1

Repositories

Showing 10 of 10 repositories
  • workbench-cli Public

    Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier for those who love hacking away at the command prompt.

    combat-sars-cov-2/workbench-cli’s past year of commit activity
    Python 0 Apache-2.0 1 8 4 Updated Feb 8, 2023
  • irida-plugin-sars-cov-2-illumina Public
    combat-sars-cov-2/irida-plugin-sars-cov-2-illumina’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Oct 11, 2022
  • irida-plugin-sars-cov-2-nanopore Public

    The nanopore workflow plugin for sars-cov2

    combat-sars-cov-2/irida-plugin-sars-cov-2-nanopore’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Oct 11, 2022
  • workbench Public Forked from bgruening/docker-galaxy

    🐳📊📚 Docker Images tracking the stable Galaxy releases.

    combat-sars-cov-2/workbench’s past year of commit activity
    Shell 0 MIT 137 0 1 Updated Oct 11, 2022
  • irida Public Forked from phac-nml/irida

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    combat-sars-cov-2/irida’s past year of commit activity
    Java 0 Apache-2.0 31 0 0 Updated May 20, 2022
  • workbench-deploy Public

    IRIDA and Galaxy deployment manifest definitions and scripts

    combat-sars-cov-2/workbench-deploy’s past year of commit activity
    HTML 1 Apache-2.0 1 8 0 Updated Feb 16, 2022
  • irida-plugin-fastp Public
    combat-sars-cov-2/irida-plugin-fastp’s past year of commit activity
    Java 0 0 0 0 Updated Dec 3, 2021
  • irida-uploader Public Forked from phac-nml/irida-uploader

    Sequence file uploader for IRIDA

    combat-sars-cov-2/irida-uploader’s past year of commit activity
    Python 0 Apache-2.0 13 0 0 Updated Dec 3, 2021
  • combatsarscov2-docs Public
    combat-sars-cov-2/combatsarscov2-docs’s past year of commit activity
    0 CC-BY-4.0 0 0 0 Updated Oct 25, 2021
  • irida-pipeline-plugins Public

    IRIDA pipeline definitions

    combat-sars-cov-2/irida-pipeline-plugins’s past year of commit activity
    Java 0 Apache-2.0 0 1 0 Updated Sep 9, 2021

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