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DESCRIPTION
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DESCRIPTION
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Package: RCTIcollection
Title: An easy-to-use wrapper function to run celltype identifiers in R
Version: 0.0.1
Authors@R:
person(given = "Seokhyun",
family = "Yoon",
role = c("aut", "cre"),
email = "syoon@dku.edu",
comment = c(ORCID = "0000-0002-0464-2233"))
Description: An easy-to-use wrapper function to run celltype identifiers. (Marker-based) HiCAT,SCINA, scSorter, scType, scCatch, Garnett, (Reference-based) MarkerCount, SingleR, CHETAH, CaSTLe, scmap-cell, scmap-cluster.
License: `use_gpl3_license()`
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Imports:
igraph,
scater,
xgboost,
SingleCellExperiment,
dplyr,
stringr,
preprocessCore,
Seurat,
org.Hs.eg.db,
scuttle,
SingleR,
CHETAH,
scmap,
SCINA,
scSorter,
garnett,
scCATCH,
reticulate