Delete paper/sections/inhibition_model.bib (#99) #121
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| name: deploy-jupyterbook-website | |
| # Relevant docs: https://docs.github.com/en/actions/learn-github-actions/ | |
| # Specifically 'contexts' (`${{ github. }}`) and 'environment variables'. | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| workflow_dispatch: {} | |
| # Allow triggering this workflow manually, from the Actions tab. | |
| jobs: | |
| build-and-deploy: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash --login {0} | |
| # The default shell on github actions is a non-login shell, | |
| # but to make `conda activate` work, we need a login shell: | |
| # https://github.com/conda-incubator/setup-miniconda#important | |
| # (No idea what `{0}` is). | |
| steps: | |
| - name: Download repo # ..to $GITHUB_WORKSPACE directory, aka cwd. | |
| uses: actions/checkout@v3 | |
| - name: Set-up conda (Miniforge) & create empty env | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-version: latest | |
| activate-environment: comob-soundloc-web | |
| # this will be the activated conda env for `run` commands in subsequent steps. | |
| # Creating a conda env from .yml file on gh actions takes ~1m46s, while other steps | |
| # take just 1s (gh-pages) to 3s (build.py). So, we cache package version resolving, | |
| # downloading & unpacking, for faster deploys. See | |
| # https://github.com/marketplace/actions/setup-miniconda#caching-environments | |
| - name: Cache conda package installation | |
| id: cache-conda-package-install | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs # Cached dir. | |
| key: ${{ hashFiles('web/conda-environment.yml') }} | |
| # Invalidate cache if the contents (and thus hash) of this file change. | |
| - name: Install packages in our conda env | |
| # ..but only if this is not already done by restoring the cached dir. | |
| if: steps.cache-conda-package-install.outputs.cache-hit != 'true' | |
| run: conda env update -f web/conda-environment.yml | |
| - name: Log env info | |
| run: | | |
| conda info | |
| conda list | |
| - name: Run build script | |
| run: python web/build.py | |
| - name: Push html to gh-pages branch. | |
| uses: peaceiris/actions-gh-pages@v3 # https://github.com/peaceiris/actions-gh-pages | |
| with: | |
| publish_dir: web/_generated/_build/html | |
| commit_message: deploy ${{ github.sha }} (${{ github.event.head_commit.message }}) | |
| github_token: ${{ secrets.GITHUB_TOKEN }} |