Use tolerance

[tomvanmele]

What type of change is this?

• Bug fix in a backwards-compatible manner.
• New feature in a backwards-compatible manner.
• Breaking change: bug fix or new feature that involve incompatible API changes.
• Other (e.g. doc update, configuration, etc)

Checklist

Put an x in the boxes that apply. You can also fill these out after creating the PR. If you're unsure about any of them, don't hesitate to ask. We're here to help! This is simply a reminder of what we are going to look for before merging your code.

• I added a line to the CHANGELOG.md file in the Unreleased section under the most fitting heading (e.g. Added, Changed, Removed).
• I ran all tests on my computer and it's all green (i.e. invoke test).
• I ran lint on my computer and there are no errors (i.e. invoke lint).
• I added new functions/classes and made them available on a second-level import, e.g. compas.datastructures.Mesh.
• I have added tests that prove my fix is effective or that my feature works.
• I have added necessary documentation (if appropriate)

[tomvanmele]

this one replaces

• compas.geometry.allclose by compas.tolerance.TOL.is_allclose
• compas.geometry.close by compas.tolerance.TOL.is_close

and removes all unnecessary tolerance setting overwrites.
all tests are now run with the same precision, where possible...

[gonzalocasas]

Ah, this got mixed into #1335
LGTM!