Micro-homology scanner for somatic sequencing data. Looks for microhomology at indel sites in WGS data.
The input files are:
- Reference genome file
- VCF file with INDELs to examine
Currently tested with VCFs from Delly and GATK/MuTect
(Maybe in the future this will also look at other SV events: INV, DUP, BND, etc...)