- support setting initial concentrations via [x]_0 #46
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| # This starter workflow is for a CMake project running on a single platform. There is a different starter workflow if you need cross-platform coverage. | |
| # See: https://github.com/actions/starter-workflows/blob/main/ci/cmake-multi-platform.yml | |
| name: Emscripten run | |
| on: | |
| push: | |
| paths: | |
| - "src/**" | |
| - "js/**" | |
| - "test/**" | |
| - "CMakeModules/**" | |
| - "CMakeLists.txt" | |
| - "VERSION.txt" | |
| - "!.github/**" | |
| - "!docs/**" | |
| - ".github/workflows/emscripten.yml" | |
| env: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| BUILD_TYPE: Release | |
| jobs: | |
| build: | |
| # The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac. | |
| # You can convert this to a matrix build if you need cross-platform coverage. | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: seanmiddleditch/gha-setup-ninja@master | |
| - uses: mymindstorm/setup-emsdk@v13 | |
| - name: Compile Dependencies | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: | | |
| cd ${{github.workspace}} | |
| curl -L -O http://downloads.sourceforge.net/libuuid/libuuid-1.0.3.tar.gz | |
| tar -zxf libuuid-1.0.3.tar.gz | |
| cd libuuid-1.0.3 | |
| emconfigure ./configure --prefix=$PWD/../em-dependencies --disable-dependency-tracking --with-pic --enable-static=yes --enable-shared=no CFLAGS='-fPIC' | |
| emmake make | |
| emmake make install | |
| cd .. | |
| rm em-dependencies/lib/libuuid.la | |
| git clone https://github.com/copasi/copasi-dependencies | |
| emcmake cmake -G Ninja -B em-build-dependencies -S copasi-dependencies \ | |
| -DCMAKE_INSTALL_PREFIX=em-dependencies \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DBUILD_UI_DEPS=OFF \ | |
| -DBUILD_zlib=ON \ | |
| -DBUILD_archive=OFF \ | |
| -DBUILD_NativeJIT=OFF \ | |
| -DBUILD_clapack=ON \ | |
| -DCMAKE_PREFIX_PATH=em-dependencies | |
| cmake --build em-build-dependencies --config=Release | |
| git clone https://github.com/copasi/COPASI | |
| cd COPASI && git checkout release/Version-4.45 && cd .. | |
| cd COPASI && gitTools/UpdateCopasiVersion --force && cd .. | |
| cp COPASI/copasi/lapack/f2c.h em-dependencies/include | |
| cp COPASI/copasi/lapack/blaswrap.h em-dependencies/include | |
| emcmake cmake -G Ninja -B em-build-copasi -S COPASI \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DBUILD_GUI=OFF \ | |
| -DENABLE_JIT:BOOL=OFF \ | |
| -DDATAVALUE_NEEDS_SIZE_T_MEMBERS=1 \ | |
| -DCOPASI_INSTALL_C_API=ON \ | |
| -DCMAKE_INSTALL_PREFIX=em-dependencies \ | |
| -DCOPASI_DEPENDENCY_DIR=em-dependencies \ | |
| -DCMAKE_PREFIX_PATH=em-dependencies \ | |
| -DDISABLE_STACK_PROTECTOR=ON \ | |
| -DF2C_INTEGER=int \ | |
| -DF2C_LOGICAL=int | |
| cmake --build em-build-copasi --config=Release | |
| cmake --install em-build-copasi --config=Release | |
| - name: Configure and build for node | |
| run: | | |
| emcmake cmake -B ${{github.workspace}}/build \ | |
| -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \ | |
| -DCOPASIJS_DEPENDENCY_DIR=${{github.workspace}}/em-dependencies \ | |
| -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/dist-node \ | |
| -DCOPASIJS_ENVIRONMENT=node \ | |
| -DCOPASIJS_INCLUDE_EXAMPLE_FILES=ON | |
| cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} | |
| cmake --install ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} | |
| - name: Configure and build for web | |
| run: | | |
| emcmake cmake -B ${{github.workspace}}/build-web \ | |
| -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \ | |
| -DCOPASIJS_DEPENDENCY_DIR=${{github.workspace}}/em-dependencies \ | |
| -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/dist-web \ | |
| -DCOPASIJS_ENVIRONMENT=web | |
| cmake --build ${{github.workspace}}/build-web --config ${{env.BUILD_TYPE}} | |
| cmake --install ${{github.workspace}}/build-web --config ${{env.BUILD_TYPE}} | |
| - name: Configure and build for web (single file) | |
| run: | | |
| emcmake cmake -B ${{github.workspace}}/build-single \ | |
| -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} \ | |
| -DCOPASIJS_DEPENDENCY_DIR=${{github.workspace}}/em-dependencies \ | |
| -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/dist-single \ | |
| -DCOPASIJS_ENVIRONMENT=web \ | |
| -DCOPASIJS_SINGLE_FILE=ON | |
| cmake --build ${{github.workspace}}/build-single --config ${{env.BUILD_TYPE}} | |
| cmake --install ${{github.workspace}}/build-single --config ${{env.BUILD_TYPE}} | |
| - name: dependencies archive | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: js-dependencies | |
| path: ${{github.workspace}}/em-dependencies/* | |
| retention-days: 90 | |
| if-no-files-found: error | |
| - name: copasijs archive (for web use, with wasm) | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: copasijs-web | |
| path: ${{github.workspace}}/dist-web/* | |
| retention-days: 90 | |
| if-no-files-found: error | |
| - name: copasijs archive (for web use, js only) | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: copasijs-web-single | |
| path: ${{github.workspace}}/dist-single/* | |
| retention-days: 90 | |
| if-no-files-found: error | |
| - name: copasijs archive (for use from node) | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: copasijs-node | |
| path: ${{github.workspace}}/dist-node/* | |
| retention-days: 90 | |
| if-no-files-found: error | |