Update cpp_fmriprep.slurm

cpp-lln-lab · Oct 23, 2023 · 7637169 · 7637169
1 parent 80c7cdf
commit 7637169
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/doc/cpp_fmriprep.slurm b/doc/cpp_fmriprep.slurm
@@ -69,6 +69,8 @@ bids_dir="$HOME/fmriprep_trial/raw"
 output_dir="$HOME/fmriprep_trial/derivatives/fmriprep"
 freesurfer_license_folder="$HOME/tools/freesurfer_license"
 
+mkdir -p "${scratch_dir}"/work-fmriprep
+
 singularity run --cleanenv \
     -B "${scratch_dir}":/scratch_dir \
     -B "${bids_dir}":/bids_dir \