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minor edit on how to run mriqc at subject level #37

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Jul 5, 2024
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minor edit on how to run mriqc at subject level #37

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14 changes: 12 additions & 2 deletions doc/cpp_mriqc.slurm
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Original file line number Diff line number Diff line change
Expand Up @@ -21,9 +21,19 @@
#
# writtent by CPP people
#
# Submission command for Lemaitre4
# USAGE on cluster:
#
# sbatch cpp_mriqc_group.slurm
# sbatch cpp_mriqc.slurm <subjID>
#
# examples:
# - 1 subject
#
# sbatch cpp_mriqc.slurm sub-01
#
# submit all the subjects (1 per job) all at once
# read subj list to submit each to a job for all the tasks
# !!! to run from within `raw` folder
# ls -d sub* | xargs -n1 -I{} sbatch path/to/cpp_mriqc.slurm {}

# create jobs_report folder in case they don't exist
mkdir -p $HOME/jobs_report/
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