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DESCRIPTION
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DESCRIPTION
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Package: crisprViz
Title: Visualization Functions for CRISPR gRNAs
Version: 1.5.2
Authors@R: c(
person("Jean-Philippe", "Fortin", email = "fortin946@gmail.com", role = c("aut", "cre")),
person("Luke", "Hoberecht", email = "lukehob3@gmail.com", role = c("aut"))
)
Description: Provides functionalities to visualize and contextualize
CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and
applications. Works in conjunction with the crisprBase and crisprDesign
Bioconductor packages. Plots are produced using the Gviz framework.
Depends: R (>= 4.2.0),
crisprBase (>= 0.99.15),
crisprDesign (>= 0.99.77)
Imports:
BiocGenerics,
Biostrings,
BSgenome,
GenomeInfoDb,
GenomicFeatures,
GenomicRanges,
grDevices,
Gviz,
IRanges,
methods,
S4Vectors,
txdbmaker
Suggests:
AnnotationHub,
BiocStyle,
BSgenome.Hsapiens.UCSC.hg38,
knitr,
rmarkdown,
rtracklayer,
testthat,
utils
biocViews:
CRISPR,
FunctionalGenomics,
GeneTarget
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
BugReports: https://github.com/crisprVerse/crisprViz/issues
URL: https://github.com/crisprVerse/crisprViz