requirements.txt

Authlib~=0.15.6
apscheduler==3.10.4
boto3~=1.35.9
Bcrypt-Flask==1.0.2
click-option-group~=0.5.5
connexion[swagger-ui]~=2.14.2
cryptography>=41.0.3
dnspython==2.6.1
dramatiq[redis,watch]==1.14.2
email-validator~=2.2.0
eventlet==0.36.1
flask-cors==4.0.1
flask-login~=0.6.2
flask-marshmallow~=0.14.0
flask-restful==0.3.10
flask-shell-ipython==0.5.1
flask-wtf~=1.2.0
Flask-APScheduler==1.13.1
Flask-Mail~=0.10.0
Flask-Migrate==4.0.7
Flask-SQLAlchemy==2.5.1
Flask~=2.2.5
flask-socketio==5.3.6
gevent-websocket==0.10.1
giturlparse~=0.12.0
gunicorn~=23.0.0
itsdangerous~=2.2.0
jwt==1.3.1
jsonschema==4.23.0
loginpass==0.5
marshmallow-sqlalchemy~=0.28.2
networkx~=3.3
nf-core~=2.5.0
pika~=1.3.2
prometheus-flask-exporter~=0.22
psycopg2-binary~=2.9.6
pygit2~=1.15.1
pyopenssl==24.2.1
pytest~=7.4.0
pytest-mock~=3.11.1
pytest-rerunfailures~=12.0.0
pytest-xdist~=3.3.1
python-dotenv~=1.0.1
python-jenkins==1.7.0
python-redis-lock~=4.0.0
PyGithub==1.55
PyYAML~=6.0.1
redis~=4.5.5
repo2rocrate~=0.1.2
requests~=2.31.0
rich~=13.8.0
rocrate==0.10.0
snakemake==6.13.1
SQLAlchemy==1.4.41
urllib3==1.26.19
uwsgi==2.0.26
watchdog==4.0.2
wheel~=0.44.0
Werkzeug~=2.2.3