.pre-commit-config.yaml

# See https://pre-commit.com for more information
# See https://pre-commit.com/hooks.html for more hooks
# Run with `poetry run pre-commit run --all-files`
repos:

  - repo: https://github.com/Lucas-C/pre-commit-hooks
    rev: v1.5.5
    hooks:
      - id: remove-crlf
      - id: remove-tabs
      - id: insert-license
        files: \.py$
        args:
          - --license-filepath
          - COPYRIGHT.txt
          - --use-current-year
          - --no-extra-eol                # see below

  - repo: https://github.com/astral-sh/ruff-pre-commit
    # Ruff version.
    rev: v0.7.3
    hooks:
      # Run the linter.
      - id: ruff
        types_or: [ python, pyi, jupyter ]
        args: [ --fix ]
      # Run the formatter.
      - id: ruff-format
        types_or: [ python, pyi, jupyter ]

  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.13.0
    hooks:
      - id: mypy
        additional_dependencies: [ "mypy_extensions", "types-python-dateutil" ] # run mypy --install-types to discover missing types to add here

  # Strip output from all jupyter notebooks, except those stored in the docs/ directory.
  # We consider everything except documentation to be source code, and source notebooks should not contain outputs.
  - repo: local
    hooks:
      - id: nbstripout
        name: nbstripout
        entry: poetry run nbstripout --extra-keys metadata.kernelspec
        require_serial: true
        language: system
        files: ^(?!docs\/).*\.ipynb$  # python regex for paths to include - everything except docs/**/*.ipynb

  # Bandit is a tool for finding common security issues in Python code. See https://github.com/PyCQA/bandit
  # Tip: add `#nosec` to lines of code to ignore checks for that line
  - repo: https://github.com/PyCQA/bandit
    rev: 1.7.10
    hooks:
      - id: bandit
        # args to use pyproject.toml for project-specific config, run on all files, only show >= medium severity (-ll), and >= medium confidence (-ii), output to screen, silence logging (-q) and aggregate errors by file.
        args: [ "-c", "pyproject.toml", "--recursive", "-ll", "-ii", "--format", "screen", "-q", "–aggregate", "file", "src/" ]
        additional_dependencies: [ "bandit[toml]" ]

  # A few basic checks
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer
        exclude_types:
          - jupyter
      - id: check-yaml
      - id: check-added-large-files
        args: [ '--maxkb=2048' ]
      - id: mixed-line-ending
      - id: detect-private-key
      - id: check-case-conflict
      - id: check-executables-have-shebangs
      - id: check-shebang-scripts-are-executable
      - id: name-tests-test
        args: [ '--pytest-test-first' ]

  - repo: https://github.com/python-poetry/poetry
    rev: 1.8.0
    hooks:
    - id: poetry-check