From f008d7e45da5871a24e575c7b7e2d2f4d935d677 Mon Sep 17 00:00:00 2001
From: Cristian Pozo Gonzalez <cristianp@correo.ugr.es>
Date: Wed, 11 Sep 2024 17:21:55 +0200
Subject: [PATCH] Update the ci workflow to use mamba instead of conda

---
 .github/workflows/run_test.yml | 25 ++++++++++++++++++++-----
 1 file changed, 20 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/run_test.yml b/.github/workflows/run_test.yml
index 8fd4698..926eca5 100644
--- a/.github/workflows/run_test.yml
+++ b/.github/workflows/run_test.yml
@@ -11,14 +11,29 @@ jobs:
       uses: actions/setup-python@v3
       with:
         python-version: '3.10'
-    - name: Add conda to system path
+    - name: Prepare mamba installation
+      env:
+          PYTHON_VERSION: '3.10'
       run: |
-        # $CONDA is an environment variable pointing to the root of the miniconda directory
-        echo $CONDA/bin >> $GITHUB_PATH
+          # setup correct python version
+          sed -i -e "s/- python=.*/- python=$PYTHON_VERSION/g" environment.yml
+
+    - name: Mamba setup
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: environment.yml
+        cache-downloads: true
+
     - name: Install dependencies
       run: |
-        conda env update --file environment.yml --name base
+        python --version
+        echo "Installing additional pip packages"
+
+        echo "pip install ."
+        pip install .
+
+        pip install pytest
+
     - name: Test with pytest
       run: |
-        conda install pytest
         pytest
\ No newline at end of file