This repository contains analysis code to accompany the main PiE system.

See our documentation.

Please also see the Weinreb-Benedict-Cudmore-2023 folder with R code to reproduce Figure 7 from the bioRxiv preprint:

Benedict J and Cudmore RH (2023) PiE: An open source pipeline for home cage behavioral analysis. bioRxiv 2023.05.05.539097; doi: https://doi.org/10.1101/2023.05.05.539097